303 lines
16 KiB
Plaintext
303 lines
16 KiB
Plaintext
ACF Autocorrelation Function
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ACF.gls Autocorrelation Function for gls Residuals
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ACF.lme Autocorrelation Function for lme Residuals
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Alfalfa Split-Plot Experiment on Varieties of Alfalfa
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Assay Bioassay on Cell Culture Plate
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BodyWeight Rat weight over time for different diets
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Cefamandole Pharmacokinetics of Cefamandole
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Dialyzer High-Flux Hemodialyzer
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Dim Extract Dimensions from an Object
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Dim.corSpatial Dimensions of a corSpatial Object
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Dim.corStruct Dimensions of a corStruct Object
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Dim.pdMat Dimensions of a pdMat Object
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Earthquake Earthquake Intensity
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Fatigue Cracks caused by metal fatigue
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Gasoline Refinery yield of gasoline
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Glucose Glucose levels over time
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Glucose2 Glucose Levels Following Alcohol Ingestion
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Gun Methods for firing naval guns
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IGF Radioimmunoassay of IGF-I Protein
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Initialize Initialize Object
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Initialize.corStruct Initialize corStruct Object
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Initialize.glsStruct Initialize a glsStruct Object
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Initialize.lmeStruct Initialize an lmeStruct Object
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Initialize.reStruct Initialize reStruct Object
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Initialize.varFunc Initialize varFunc Object
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LDEsysMat Generate system matrix for LDEs
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Machines Productivity Scores for Machines and Workers
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MathAchSchool School demographic data for MathAchieve
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MathAchieve Mathematics achievement scores
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Meat Tenderness of meat
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Milk Protein content of cows' milk
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Muscle Contraction of heart muscle sections
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Names Names Associated with an Object
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Names.formula Extract Names from a formula
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Names.pdBlocked Names of a pdBlocked Object
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Names.pdMat Names of a pdMat Object
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Names.reStruct Names of an reStruct Object
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Nitrendipene Assay of nitrendipene
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Oats Split-plot Experiment on Varieties of Oats
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Orthodont Growth curve data on an orthdontic measurement
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Ovary Counts of Ovarian Follicles
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Oxboys Heights of Boys in Oxford
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Oxide Variability in Semiconductor Manufacturing
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PBG Effect of Phenylbiguanide on Blood Pressure
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Phenobarb Phenobarbitol Kinetics
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Pixel X-ray pixel intensities over time
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Quinidine Quinidine Kinetics
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Rail Evaluation of Stress in Railway Rails
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RatPupWeight The weight of rat pups
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Relaxin Assay for Relaxin
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Remifentanil Pharmacokinetics of Remifentanil
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Soybean Growth of soybean plants
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Spruce Growth of Spruce Trees
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Tetracycline1 Pharmacokinetics of tetracycline
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Tetracycline2 Pharmacokinetics of tetracycline
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VarCorr Extract variance and correlation components
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Variogram Calculate Semi-variogram
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Variogram.corExp Calculate Semi-variogram for a corExp Object
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Variogram.corGaus Calculate Semi-variogram for a corGaus Object
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Variogram.corLin Calculate Semi-variogram for a corLin Object
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Variogram.corRatio Calculate Semi-variogram for a corRatio Object
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Variogram.corSpatial Calculate Semi-variogram for a corSpatial
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Object
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Variogram.corSpher Calculate Semi-variogram for a corSpher Object
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Variogram.default Calculate Semi-variogram
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Variogram.gls Calculate Semi-variogram for Residuals from a
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gls Object
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Variogram.lme Calculate Semi-variogram for Residuals from an
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lme Object
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Wafer Modeling of Analog MOS Circuits
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Wheat Yields by growing conditions
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Wheat2 Wheat Yield Trials
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[.pdMat Subscript a pdMat Object
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allCoef Extract Coefficients from a Set of Objects
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anova.gls Compare Likelihoods of Fitted Objects
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anova.lme Compare Likelihoods of Fitted Objects
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as.matrix.corStruct Matrix of a corStruct Object
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as.matrix.pdMat Matrix of a pdMat Object
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as.matrix.reStruct Matrices of an reStruct Object
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asOneFormula Combine Formulas of a Set of Objects
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asTable Convert groupedData to a matrix
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augPred Augmented Predictions
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balancedGrouped Create a groupedData object from a matrix
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bdf Language scores
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coef.corStruct Coefficients of a corStruct Object
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coef.gnls Extract gnls Coefficients
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coef.lmList Extract lmList Coefficients
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coef.lme Extract lme Coefficients
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coef.modelStruct Extract modelStruct Object Coefficients
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coef.pdMat pdMat Object Coefficients
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coef.reStruct reStruct Object Coefficients
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coef.varFunc varFunc Object Coefficients
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coef<- Assign Values to Coefficients
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collapse Collapse According to Groups
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collapse.groupedData Collapse a groupedData Object
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compareFits Compare Fitted Objects
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comparePred Compare Predictions
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corAR1 AR(1) Correlation Structure
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corARMA ARMA(p,q) Correlation Structure
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corCAR1 Continuous AR(1) Correlation Structure
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corClasses Correlation Structure Classes
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corCompSymm Compound Symmetry Correlation Structure
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corExp Exponential Correlation Structure
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corFactor Factor of a Correlation Matrix
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corFactor.corStruct Factor of a corStruct Object Matrix
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corGaus Gaussian Correlation Structure
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corLin Linear Correlation Structure
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corMatrix Extract Correlation Matrix
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corMatrix.corStruct Matrix of a corStruct Object
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corMatrix.pdMat Extract Correlation Matrix from a pdMat Object
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corMatrix.reStruct Extract Correlation Matrix from Components of
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an reStruct Object
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corNatural General correlation in natural parameterization
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corRatio Rational Quadratic Correlation Structure
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corSpatial Spatial Correlation Structure
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corSpher Spherical Correlation Structure
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corSymm General Correlation Structure
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covariate<- Assign Covariate Values
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covariate<-.varFunc Assign varFunc Covariate
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ergoStool Ergometrics experiment with stool types
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fdHess Finite difference Hessian
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fitted.glsStruct Calculate glsStruct Fitted Values
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fitted.gnlsStruct Calculate gnlsStruct Fitted Values
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fitted.lmList Extract lmList Fitted Values
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fitted.lme Extract lme Fitted Values
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fitted.lmeStruct Calculate lmeStruct Fitted Values
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fitted.nlmeStruct Calculate nlmeStruct Fitted Values
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fixed.effects Extract Fixed Effects
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fixef.lmList Extract lmList Fixed Effects
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formula.pdBlocked Extract pdBlocked Formula
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formula.pdMat Extract pdMat Formula
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formula.reStruct Extract reStruct Object Formula
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gapply Apply a Function by Groups
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getCovariate Extract Covariate from an Object
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getCovariate.corStruct
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Extract corStruct Object Covariate
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getCovariate.data.frame
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Extract Data Frame Covariate
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getCovariate.varFunc Extract varFunc Covariate
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getCovariateFormula Extract Covariates Formula
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getData Extract Data from an Object
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getData.gls Extract gls Object Data
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getData.lmList Extract lmList Object Data
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getData.lme Extract lme Object Data
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getGroups Extract Grouping Factors from an Object
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getGroups.corStruct Extract corStruct Groups
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getGroups.data.frame Extract Groups from a Data Frame
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getGroups.gls Extract gls Object Groups
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getGroups.lmList Extract lmList Object Groups
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getGroups.lme Extract lme Object Groups
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getGroups.varFunc Extract varFunc Groups
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getGroupsFormula Extract Grouping Formula
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getResponse Extract Response Variable from an Object
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getResponseFormula Extract Formula Specifying Response Variable
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getVarCov Extract variance-covariance matrix
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gls Fit Linear Model Using Generalized Least
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Squares
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glsControl Control Values for gls Fit
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glsObject Fitted gls Object
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glsStruct Generalized Least Squares Structure
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gnls Fit Nonlinear Model Using Generalized Least
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Squares
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gnlsControl Control Values for gnls Fit
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gnlsObject Fitted gnls Object
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gnlsStruct Generalized Nonlinear Least Squares Structure
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groupedData Construct a groupedData Object
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gsummary Summarize by Groups
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intervals Confidence Intervals on Coefficients
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intervals.gls Confidence Intervals on gls Parameters
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intervals.lmList Confidence Intervals on lmList Coefficients
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intervals.lme Confidence Intervals on lme Parameters
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isBalanced Check a Design for Balance
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isInitialized Check if Object is Initialized
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lmList List of lm Objects with a Common Model
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lmList.groupedData lmList Fit from a groupedData Object
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lme Linear Mixed-Effects Models
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lme.groupedData LME fit from groupedData Object
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lme.lmList LME fit from lmList Object
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lmeControl Specifying Control Values for lme Fit
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lmeObject Fitted lme Object
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lmeStruct Linear Mixed-Effects Structure
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logDet Extract the Logarithm of the Determinant
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logDet.corStruct Extract corStruct Log-Determinant
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logDet.pdMat Extract Log-Determinant from a pdMat Object
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logDet.reStruct Extract reStruct Log-Determinants
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logLik.corStruct Extract corStruct Log-Likelihood
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logLik.glsStruct Log-Likelihood of a glsStruct Object
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logLik.gnls Log-Likelihood of a gnls Object
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logLik.gnlsStruct Log-Likelihood of a gnlsStruct Object
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logLik.lmList Log-Likelihood of an lmList Object
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logLik.lme Log-Likelihood of an lme Object
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logLik.lmeStruct Log-Likelihood of an lmeStruct Object
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logLik.reStruct Calculate reStruct Log-Likelihood
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logLik.varFunc Extract varFunc logLik
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matrix<- Assign Matrix Values
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matrix<-.pdMat Assign Matrix to a pdMat or pdBlocked Object
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matrix<-.reStruct Assign reStruct Matrices
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model.matrix.reStruct reStruct Model Matrix
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needUpdate Check if Update is Needed
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needUpdate.modelStruct
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Check if a modelStruct Object Needs Updating
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nlme Nonlinear Mixed-Effects Models
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nlme.nlsList NLME fit from nlsList Object
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nlmeControl Control Values for nlme Fit
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nlmeObject Fitted nlme Object
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nlmeStruct Nonlinear Mixed-Effects Structure
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nlsList List of nls Objects with a Common Model
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nlsList.selfStart nlsList Fit from a selfStart Function
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pairs.compareFits Pairs Plot of compareFits Object
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pairs.lmList Pairs Plot of an lmList Object
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pairs.lme Pairs Plot of an lme Object
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pdBlocked Positive-Definite Block Diagonal Matrix
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pdClasses Positive-Definite Matrix Classes
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pdCompSymm Positive-Definite Matrix with Compound Symmetry
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Structure
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pdConstruct Construct pdMat Objects
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pdConstruct.pdBlocked Construct pdBlocked Objects
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pdDiag Diagonal Positive-Definite Matrix
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pdFactor Square-Root Factor of a Positive-Definite
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Matrix
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pdFactor.reStruct Extract Square-Root Factor from Components of
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an reStruct Object
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pdIdent Multiple of the Identity Positive-Definite
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Matrix
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pdLogChol General Positive-Definite Matrix
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pdMat Positive-Definite Matrix
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pdMatrix Extract Matrix or Square-Root Factor from a
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pdMat Object
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pdMatrix.reStruct Extract Matrix or Square-Root Factor from
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Components of an reStruct Object
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pdNatural General Positive-Definite Matrix in Natural
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Parametrization
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pdSymm General Positive-Definite Matrix
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phenoModel Model function for the Phenobarb data
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plot.ACF Plot an ACF Object
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plot.Variogram Plot a Variogram Object
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plot.augPred Plot an augPred Object
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plot.compareFits Plot a compareFits Object
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plot.gls Plot a gls Object
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plot.intervals.lmList Plot lmList Confidence Intervals
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plot.lmList Plot an lmList Object
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plot.lme Plot an lme or nls object
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plot.nffGroupedData Plot an nffGroupedData Object
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plot.nfnGroupedData Plot an nfnGroupedData Object
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plot.nmGroupedData Plot an nmGroupedData Object
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plot.ranef.lmList Plot a ranef.lmList Object
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plot.ranef.lme Plot a ranef.lme Object
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pooledSD Extract Pooled Standard Deviation
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predict.gls Predictions from a gls Object
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predict.gnls Predictions from a gnls Object
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predict.lmList Predictions from an lmList Object
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predict.lme Predictions from an lme Object
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predict.nlme Predictions from an nlme Object
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print.summary.pdMat Print a summary.pdMat Object
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print.varFunc Print a varFunc Object
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qqnorm.gls Normal Plot of Residuals from a gls Object
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qqnorm.lme Normal Plot of Residuals or Random Effects from
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an lme Object
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quinModel Model function for the Quinidine data
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random.effects Extract Random Effects
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ranef.lmList Extract lmList Random Effects
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ranef.lme Extract lme Random Effects
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reStruct Random Effects Structure
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recalc Recalculate Condensed Linear Model Object
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recalc.corStruct Recalculate for corStruct Object
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recalc.modelStruct Recalculate for a modelStruct Object
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recalc.reStruct Recalculate for an reStruct Object
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recalc.varFunc Recalculate for varFunc Object
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residuals.gls Extract gls Residuals
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residuals.glsStruct Calculate glsStruct Residuals
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residuals.gnlsStruct Calculate gnlsStruct Residuals
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residuals.lmList Extract lmList Residuals
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residuals.lme Extract lme Residuals
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residuals.lmeStruct Calculate lmeStruct Residuals
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residuals.nlmeStruct Calculate nlmeStruct Residuals
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simulate.lme Simulate Results from 'lme' Models
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solve.pdMat Calculate Inverse of a Positive-Definite Matrix
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solve.reStruct Apply Solve to an reStruct Object
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splitFormula Split a Formula
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summary.corStruct Summarize a corStruct Object
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summary.gls Summarize a Generalized Least Squares 'gls'
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Object
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summary.lmList Summarize an lmList Object
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summary.lme Summarize an lme Object
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summary.modelStruct Summarize a modelStruct Object
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summary.nlsList Summarize an nlsList Object
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summary.pdMat Summarize a pdMat Object
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summary.varFunc Summarize "varFunc" Object
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update.modelStruct Update a modelStruct Object
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update.varFunc Update varFunc Object
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varClasses Variance Function Classes
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varComb Combination of Variance Functions
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varConstPower Constant Plus Power Variance Function
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varConstProp Constant Plus Proportion Variance Function
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varExp Exponential Variance Function
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varFixed Fixed Variance Function
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varFunc Variance Function Structure
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varIdent Constant Variance Function
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varPower Power Variance Function
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varWeights Extract Variance Function Weights
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varWeights.glsStruct Variance Weights for glsStruct Object
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varWeights.lmeStruct Variance Weights for lmeStruct Object
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