246 lines
7.5 KiB
Plaintext
246 lines
7.5 KiB
Plaintext
dendextend-package dendextend-package
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%>% reexports
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all.equal.dendlist all.equal.dendrogram
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all.equal.dendrogram all.equal.dendrogram
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all_couple_rotations_at_k all_couple_rotations_at_k
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all_unique all_unique
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as.dendlist as.dendlist
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as.ggdend ggdend
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as.ggdend.dendrogram ggdend
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as.phylo.dendrogram as.phylo.dendrogram
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assign_dendextend_options assign_dendextend_options
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assign_values_to_branches_edgePar assign_values_to_branches_edgePar
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assign_values_to_leaves_edgePar assign_values_to_leaves_edgePar
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assign_values_to_leaves_nodePar assign_values_to_leaves_nodePar
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assign_values_to_nodes_nodePar assign_values_to_nodes_nodePar
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as_hclust_fixed as_hclust_fixed
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bakers_gamma_for_2_k_matrix bakers_gamma_for_2_k_matrix
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Bk Bk
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Bk_permutations Bk_permutations
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Bk_plot Bk_plot
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branches_attr_by_clusters branches_attr_by_clusters
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branches_attr_by_labels branches_attr_by_labels
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branches_attr_by_lists branches_attr_by_lists
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branches_color color_branches
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circlize_dendrogram circlize_dendrogram
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click_rotate click_rotate
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click_rotate.default click_rotate
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click_rotate.dendrogram click_rotate
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collapse_branch collapse_branch
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collapse_labels collapse_labels
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colored_bars colored_bars
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colored_dots colored_dots
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color_branches color_branches
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color_labels color_labels
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color_unique_labels color_unique_labels
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colour_branches color_branches
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colour_labels color_labels
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common_subtrees_clusters common_subtrees_clusters
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cor.dendlist cor.dendlist
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cor_bakers_gamma cor_bakers_gamma
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cor_bakers_gamma.default cor_bakers_gamma
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cor_bakers_gamma.dendlist cor_bakers_gamma
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cor_bakers_gamma.dendrogram cor_bakers_gamma
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cor_bakers_gamma.hclust cor_bakers_gamma
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cor_common_nodes cor_common_nodes
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cor_cophenetic cor_cophenetic
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cor_cophenetic.default cor_cophenetic
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cor_cophenetic.dendlist cor_cophenetic
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cor_FM_index cor_FM_index
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count_terminal_nodes count_terminal_nodes
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cutree cutree-methods
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cutree.agnes cutree-methods
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cutree.default cutree-methods
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cutree.dendrogram cutree-methods
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cutree.diana cutree-methods
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cutree.hclust cutree-methods
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cutree.phylo cutree-methods
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cutree_1h.dendrogram cutree_1h.dendrogram
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cutree_1k.dendrogram cutree_1k.dendrogram
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cut_lower_fun cut_lower_fun
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dendbackback tanglegram
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dendextend dendextend-package
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dendextend_cut_lower_fun cut_lower_fun
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dendextend_heights_per_k.dendrogram heights_per_k.dendrogram
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dendextend_options dendextend_options
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dendlist dendlist
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DendSer.dendrogram DendSer.dendrogram
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dend_diff dend_diff
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dend_diff.dendlist dend_diff
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dend_diff.dendrogram dend_diff
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dend_expend find_dend
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dist.dendlist dist.dendlist
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distinct_edges distinct_edges
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dist_long dist_long
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duplicate_leaf duplicate_leaf
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entanglement entanglement
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entanglement.dendlist entanglement
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entanglement.dendrogram entanglement
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entanglement.hclust entanglement
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entanglement.phylo entanglement
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fac2num fac2num
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find_dend find_dend
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find_dendrogram find_dendrogram
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find_k find_k
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fix_members_attr.dendrogram fix_members_attr.dendrogram
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flatten.dendrogram flatten.dendrogram
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flip_leaves flip_leaves
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FM_index FM_index
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FM_index_permutation FM_index_permutation
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FM_index_R FM_index_R
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get_branches_heights get_branches_heights
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get_childrens_heights get_childrens_heights
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get_leaves_attr get_leaves_attr
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get_leaves_branches_attr get_leaves_branches_attr
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get_leaves_branches_col get_leaves_branches_col
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get_leaves_edgePar get_leaves_edgePar
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get_leaves_nodePar get_leaves_nodePar
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get_nodes_attr get_nodes_attr
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get_nodes_xy get_nodes_xy
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get_root_branches_attr get_root_branches_attr
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get_subdendrograms get_subdendrograms
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ggdend ggdend
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ggplot.dendrogram ggdend
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ggplot.ggdend ggdend
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hang.dendrogram hang.dendrogram
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has_component_in_attribute has_component_in_attribute
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has_edgePar has_component_in_attribute
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has_nodePar has_component_in_attribute
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heights_per_k.dendrogram heights_per_k.dendrogram
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highlight_branches highlight_branches
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highlight_branches_col highlight_branches
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highlight_branches_lwd highlight_branches
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highlight_distinct_edges highlight_distinct_edges
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highlight_distinct_edges.dendlist highlight_distinct_edges
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highlight_distinct_edges.dendrogram highlight_distinct_edges
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identify.dendrogram identify.dendrogram
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intersect_trees intersect_trees
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is.dendlist is_some_class
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is.dendrogram is_some_class
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is.dist is_some_class
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is.hclust is_some_class
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is.natural.number is.natural.number
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is.phylo is_some_class
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is_null_list is_null_list
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is_some_class is_some_class
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khan khan
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labels.hclust labels-assign
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labels.phylo labels-assign
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labels<- labels-assign
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labels<-.default labels-assign
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labels<-.dendrogram labels-assign
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labels<-.hclust labels-assign
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labels<-.phylo labels-assign
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labels_cex labels_cex
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labels_cex<- labels_cex
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labels_col labels_colors
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labels_colors labels_colors
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labels_colors<- labels_colors
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ladderize ladderize
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ladderize.dendlist ladderize
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ladderize.dendrogram ladderize
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ladderize.phylo ladderize
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leaf_Colors leaf_Colors
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leaf_colors leaf_Colors
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lowest_common_branch lowest_common_branch
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match_order_by_labels match_order_by_labels
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match_order_dendrogram_by_old_order match_order_dendrogram_by_old_order
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max_depth depth
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min_depth depth
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na_locf na_locf
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nleaves nleaves
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nleaves.default nleaves
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nleaves.dendlist nleaves
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nleaves.dendrogram nleaves
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nleaves.hclust nleaves
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nleaves.phylo nleaves
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nnodes nnodes
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nnodes.default nnodes
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nnodes.dendrogram nnodes
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nnodes.hclust nnodes
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nnodes.phylo nnodes
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noded_with_condition noded_with_condition
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order.dendrogram<- order.dendrogram-assign
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order.hclust order.hclust
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partition_leaves partition_leaves
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place_labels set_labels
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plot.dendlist dendlist
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plot.find_k find_k
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plot_horiz.dendrogram plot_horiz.dendrogram
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prepare.ggdend ggdend
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print.ggdend ggdend
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prune prune
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prune.default prune
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prune.dendrogram prune
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prune.hclust prune
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prune.phylo prune
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prune.rpart prune
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prune_common_subtrees.dendlist prune_common_subtrees.dendlist
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prune_leaf prune_leaf
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pvclust_edges pvclust_edges
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pvclust_show_signif pvclust_show_signif
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pvclust_show_signif_gradient pvclust_show_signif_gradient
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pvrect2 pvrect2
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raise.dendrogram raise.dendrogram
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rank_branches rank_branches
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rank_order.dendrogram rank_order.dendrogram
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rank_values_with_clusters rank_values_with_clusters
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rect.dendrogram rect.dendrogram
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reexports reexports
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reindex_dend reindex_dend
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remove_branches_edgePar remove_branches_edgePar
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remove_leaves_nodePar remove_leaves_nodePar
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remove_nodes_nodePar remove_nodes_nodePar
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rev.hclust rotate
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rllply rllply
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rotate rotate
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rotate.default rotate
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rotate.dendrogram rotate
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rotate.hclust rotate
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rotate.phylo rotate
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rotate_DendSer rotate_DendSer
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sample.dendrogram sample.dendrogram
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seriate_dendrogram seriate_dendrogram
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set set
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set.data.table set
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set.dendlist set
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set.dendrogram set
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set_labels set_labels
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shuffle shuffle
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shuffle.default shuffle
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shuffle.dendlist shuffle
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shuffle.dendrogram shuffle
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shuffle.hclust shuffle
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shuffle.phylo shuffle
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sort.dendlist rotate
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sort.dendrogram rotate
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sort.hclust rotate
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sort_2_clusters_vectors sort_2_clusters_vectors
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sort_dist_mat sort_dist_mat
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sort_levels_values sort_levels_values
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tanglegram tanglegram
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tanglegram.default tanglegram
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tanglegram.dendlist tanglegram
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tanglegram.dendrogram tanglegram
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tanglegram.hclust tanglegram
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tanglegram.phylo tanglegram
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theme_dendro theme_dendro
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unbranch unbranch
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unbranch.default unbranch
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unbranch.dendrogram unbranch
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unbranch.hclust unbranch
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unbranch.phylo unbranch
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unclass_dend unclass_dend
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untangle untangle
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untangle.default untangle
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untangle.dendlist untangle
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untangle.dendrogram untangle
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untangle_DendSer untangle_DendSer
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untangle_labels untangle
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untangle_random_search untangle_random_search
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untangle_step_rotate_1side untangle_step_rotate_1side
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untangle_step_rotate_2side untangle_step_rotate_2side
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untangle_step_rotate_both_side untangle_step_rotate_both_side
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which_leaf which_leaf
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which_node which_node
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