73 lines
2.7 KiB
R
73 lines
2.7 KiB
R
## ----setup, include=FALSE-----------------------------------------------------
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knitr::opts_chunk$set(echo = TRUE, eval = interactive())
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## ----eval = FALSE-------------------------------------------------------------
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# install.packages("BiocManager", repos = "https://cloud.r-project.org")
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## ----eval = FALSE-------------------------------------------------------------
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# BiocManager::install(c("GenomicRanges", "Organism.dplyr"))
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## ----eval = FALSE-------------------------------------------------------------
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# BiocManager::install()
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## -----------------------------------------------------------------------------
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# BiocManager::version()
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## -----------------------------------------------------------------------------
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# BiocManager::valid()
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## -----------------------------------------------------------------------------
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# avail <- BiocManager::available()
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# length(avail) # all CRAN & Bioconductor packages
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# BiocManager::available("BSgenome.Hsapiens") # BSgenome.Hsapiens.* packages
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## ----eval=FALSE---------------------------------------------------------------
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# options(
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# repos = c(
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# getOption("repos"),
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# CRANhaven = "https://cranhaven.r-universe.dev"
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# )
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# )
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# BiocManager::install('archivedPackage')
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## ----eval = FALSE-------------------------------------------------------------
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# BiocManager::install(version="3.7")
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## ----eval = FALSE-------------------------------------------------------------
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# .libPaths()
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## ----eval = FALSE-------------------------------------------------------------
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# options(
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# repos = c(CRAN_mirror = "file:///path/to/CRAN-mirror"),
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# BioC_mirror = "file:///path/to/Bioc-mirror"
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# )
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## ----eval = FALSE-------------------------------------------------------------
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# options(
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# BIOCONDUCTOR_ONLINE_VERSION_DIAGNOSIS = FALSE
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# )
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## ----eval = FALSE-------------------------------------------------------------
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# install.package(c("BiocManager", "BiocVersion"))
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## ----eval = FALSE-------------------------------------------------------------
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# options(
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# BIOCONDUCTOR_CONFIG_FILE = "file:///path/to/config.yaml"
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# )
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## ----out.width = '100%', echo = FALSE, eval = TRUE----------------------------
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knitr::include_graphics("img/badges.png")
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## ----out.width = '100%', echo = FALSE, eval = TRUE----------------------------
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knitr::include_graphics("img/archives.png")
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## ----eval = FALSE-------------------------------------------------------------
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# BiocManager::install()
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## ----eval = FALSE-------------------------------------------------------------
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# BiocManager::valid()
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## ----eval = TRUE--------------------------------------------------------------
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sessionInfo()
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