1040 lines
15 KiB
Plaintext
1040 lines
15 KiB
Plaintext
# script to make cd4.nested
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library(boot)
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data(cd4)
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temp <- boot(cd4, nested.corr, R=1, stype="w", t0=corr(cd4), M=9)
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tempcl <- temp$call
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tempcl$R <- 999
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tempcl$M <- 249
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junk <- scan(file="",list(0,0),nmax=999*2)
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-0.542 0.304
|
|
-0.558 0.332
|
|
-0.767 0.152
|
|
-0.071 0.412
|
|
0.660 0.620
|
|
0.032 0.524
|
|
0.489 0.612
|
|
-0.658 0.256
|
|
-0.001 0.500
|
|
-0.344 0.332
|
|
0.356 0.544
|
|
0.093 0.532
|
|
0.988 0.768
|
|
-0.215 0.392
|
|
1.478 0.816
|
|
-0.745 0.212
|
|
0.324 0.624
|
|
1.159 0.772
|
|
1.183 0.784
|
|
0.069 0.500
|
|
-2.341 0.016
|
|
0.821 0.728
|
|
1.557 0.924
|
|
-0.417 0.320
|
|
0.423 0.568
|
|
-1.048 0.112
|
|
-0.201 0.408
|
|
-1.616 0.092
|
|
0.977 0.740
|
|
-0.061 0.428
|
|
-0.359 0.360
|
|
0.030 0.444
|
|
0.206 0.544
|
|
-1.570 0.052
|
|
-1.882 0.024
|
|
-0.310 0.348
|
|
-0.200 0.440
|
|
-0.927 0.132
|
|
-0.140 0.416
|
|
6.426 0.988
|
|
1.455 0.796
|
|
-0.467 0.344
|
|
0.214 0.536
|
|
0.121 0.504
|
|
-1.076 0.112
|
|
-0.523 0.260
|
|
-0.238 0.388
|
|
-0.188 0.432
|
|
-0.308 0.300
|
|
-0.548 0.224
|
|
2.200 0.904
|
|
-1.019 0.148
|
|
-0.086 0.452
|
|
0.715 0.708
|
|
0.513 0.676
|
|
-0.916 0.188
|
|
0.509 0.724
|
|
-0.777 0.184
|
|
-1.028 0.120
|
|
-0.163 0.348
|
|
1.825 0.912
|
|
0.936 0.788
|
|
-0.847 0.236
|
|
0.948 0.756
|
|
-0.166 0.424
|
|
-0.459 0.304
|
|
-0.244 0.404
|
|
0.668 0.664
|
|
0.201 0.544
|
|
-1.586 0.048
|
|
-0.248 0.352
|
|
0.501 0.636
|
|
-0.027 0.404
|
|
-0.994 0.120
|
|
1.553 0.900
|
|
0.986 0.804
|
|
0.395 0.664
|
|
0.326 0.612
|
|
-0.579 0.208
|
|
0.004 0.508
|
|
-0.610 0.192
|
|
0.061 0.348
|
|
0.150 0.516
|
|
1.833 0.940
|
|
-0.172 0.476
|
|
-0.411 0.344
|
|
1.312 0.824
|
|
-0.249 0.436
|
|
1.583 0.872
|
|
-0.746 0.136
|
|
0.334 0.552
|
|
2.246 0.968
|
|
-0.298 0.344
|
|
-0.213 0.432
|
|
-0.665 0.212
|
|
2.006 0.912
|
|
1.653 0.872
|
|
0.621 0.676
|
|
-1.736 0.036
|
|
-0.283 0.376
|
|
-0.038 0.472
|
|
2.060 0.928
|
|
1.043 0.776
|
|
6.828 0.996
|
|
-1.116 0.112
|
|
0.452 0.616
|
|
0.115 0.484
|
|
2.737 0.932
|
|
0.372 0.608
|
|
2.498 0.944
|
|
-0.535 0.312
|
|
-0.350 0.340
|
|
-1.899 0.036
|
|
1.397 0.792
|
|
-0.023 0.488
|
|
0.546 0.664
|
|
0.398 0.596
|
|
-0.793 0.212
|
|
-0.708 0.216
|
|
-0.011 0.476
|
|
-0.493 0.256
|
|
-2.167 0.052
|
|
-0.876 0.164
|
|
0.637 0.728
|
|
-0.946 0.148
|
|
-0.836 0.156
|
|
2.177 0.888
|
|
1.402 0.820
|
|
-0.666 0.236
|
|
0.110 0.388
|
|
3.174 0.952
|
|
-0.888 0.164
|
|
0.418 0.596
|
|
1.639 0.872
|
|
0.866 0.772
|
|
-0.705 0.176
|
|
1.089 0.760
|
|
-0.145 0.424
|
|
-0.421 0.392
|
|
1.982 0.920
|
|
0.108 0.532
|
|
1.156 0.812
|
|
1.580 0.780
|
|
-0.537 0.312
|
|
1.897 0.916
|
|
-0.763 0.212
|
|
-0.625 0.244
|
|
2.069 0.952
|
|
-0.151 0.420
|
|
0.688 0.720
|
|
-0.599 0.260
|
|
0.853 0.744
|
|
-0.767 0.192
|
|
0.541 0.620
|
|
-0.647 0.228
|
|
2.548 0.968
|
|
-1.238 0.112
|
|
-0.327 0.380
|
|
0.030 0.544
|
|
1.425 0.852
|
|
-0.703 0.212
|
|
1.248 0.836
|
|
1.115 0.816
|
|
1.333 0.792
|
|
-0.380 0.304
|
|
-0.870 0.188
|
|
1.067 0.756
|
|
-0.985 0.088
|
|
-0.339 0.296
|
|
-1.463 0.052
|
|
0.341 0.560
|
|
-0.204 0.388
|
|
0.577 0.596
|
|
-0.792 0.208
|
|
0.084 0.492
|
|
-1.002 0.172
|
|
-1.224 0.064
|
|
0.792 0.716
|
|
0.704 0.656
|
|
1.208 0.828
|
|
-0.087 0.440
|
|
-1.072 0.180
|
|
-0.998 0.144
|
|
2.540 0.960
|
|
-0.360 0.272
|
|
1.549 0.900
|
|
-1.793 0.016
|
|
-0.449 0.316
|
|
0.006 0.492
|
|
-0.005 0.480
|
|
-1.018 0.088
|
|
2.047 0.916
|
|
0.095 0.492
|
|
0.943 0.752
|
|
0.291 0.596
|
|
-1.024 0.128
|
|
0.944 0.812
|
|
0.033 0.540
|
|
1.268 0.792
|
|
0.449 0.644
|
|
3.289 0.988
|
|
2.087 0.884
|
|
0.504 0.640
|
|
1.161 0.832
|
|
1.523 0.840
|
|
-1.057 0.120
|
|
-0.078 0.532
|
|
-0.870 0.176
|
|
0.047 0.520
|
|
1.706 0.888
|
|
0.568 0.604
|
|
0.811 0.776
|
|
-1.592 0.120
|
|
0.475 0.664
|
|
-0.939 0.112
|
|
-0.053 0.416
|
|
5.270 0.988
|
|
2.233 0.924
|
|
-0.819 0.168
|
|
-1.034 0.112
|
|
-0.247 0.368
|
|
0.981 0.764
|
|
0.165 0.564
|
|
-0.813 0.208
|
|
0.190 0.568
|
|
-0.454 0.288
|
|
0.607 0.668
|
|
-0.665 0.260
|
|
-0.138 0.412
|
|
0.347 0.624
|
|
3.328 0.940
|
|
1.128 0.784
|
|
2.335 0.968
|
|
1.273 0.844
|
|
-0.154 0.396
|
|
-0.054 0.432
|
|
-0.517 0.236
|
|
0.174 0.564
|
|
0.088 0.536
|
|
-0.590 0.224
|
|
0.459 0.644
|
|
0.732 0.704
|
|
3.150 0.956
|
|
-0.489 0.292
|
|
0.012 0.488
|
|
0.575 0.644
|
|
-0.111 0.448
|
|
3.006 0.924
|
|
-0.496 0.236
|
|
0.673 0.672
|
|
0.842 0.756
|
|
0.440 0.668
|
|
-0.301 0.416
|
|
0.401 0.584
|
|
3.002 0.972
|
|
-0.458 0.312
|
|
1.929 0.904
|
|
1.385 0.836
|
|
-1.517 0.076
|
|
-1.178 0.120
|
|
-1.057 0.092
|
|
0.349 0.612
|
|
-0.500 0.264
|
|
-1.323 0.084
|
|
-0.543 0.272
|
|
1.251 0.848
|
|
-0.427 0.336
|
|
1.248 0.812
|
|
2.041 0.912
|
|
-1.427 0.040
|
|
-2.134 0.012
|
|
-0.188 0.380
|
|
-0.970 0.136
|
|
-1.005 0.136
|
|
-0.121 0.412
|
|
0.314 0.596
|
|
-1.833 0.044
|
|
0.141 0.540
|
|
2.007 0.944
|
|
1.716 0.856
|
|
2.131 0.908
|
|
-0.313 0.360
|
|
-0.232 0.420
|
|
0.008 0.472
|
|
-0.782 0.156
|
|
-0.456 0.300
|
|
-0.423 0.308
|
|
-0.371 0.304
|
|
-0.156 0.468
|
|
1.309 0.844
|
|
1.077 0.800
|
|
-0.766 0.168
|
|
-0.628 0.268
|
|
-0.713 0.204
|
|
-0.521 0.252
|
|
1.767 0.880
|
|
0.569 0.604
|
|
-0.024 0.504
|
|
4.942 0.916
|
|
-0.051 0.432
|
|
-0.326 0.336
|
|
0.816 0.704
|
|
-0.295 0.356
|
|
0.207 0.592
|
|
0.961 0.772
|
|
3.595 0.980
|
|
0.942 0.756
|
|
0.072 0.496
|
|
1.819 0.872
|
|
0.758 0.688
|
|
8.778 0.984
|
|
-0.598 0.292
|
|
1.979 0.924
|
|
-0.381 0.236
|
|
-0.367 0.284
|
|
-0.537 0.300
|
|
0.937 0.768
|
|
1.641 0.808
|
|
-0.400 0.332
|
|
0.175 0.540
|
|
0.514 0.704
|
|
0.284 0.540
|
|
2.383 0.856
|
|
1.450 0.812
|
|
0.557 0.660
|
|
0.128 0.508
|
|
-0.692 0.180
|
|
0.853 0.800
|
|
-0.936 0.128
|
|
2.212 0.924
|
|
-0.033 0.456
|
|
0.831 0.700
|
|
-0.024 0.460
|
|
0.957 0.776
|
|
-0.323 0.328
|
|
1.112 0.784
|
|
-0.060 0.412
|
|
-0.108 0.412
|
|
-1.699 0.040
|
|
1.583 0.832
|
|
0.335 0.572
|
|
-1.355 0.084
|
|
-1.408 0.116
|
|
-0.629 0.240
|
|
0.121 0.492
|
|
0.449 0.656
|
|
-1.767 0.100
|
|
-0.502 0.236
|
|
0.015 0.452
|
|
0.013 0.484
|
|
0.807 0.732
|
|
-1.236 0.088
|
|
0.545 0.688
|
|
1.738 0.916
|
|
-1.314 0.068
|
|
1.060 0.876
|
|
0.348 0.660
|
|
1.032 0.816
|
|
-1.209 0.084
|
|
-0.504 0.292
|
|
-1.395 0.052
|
|
1.774 0.864
|
|
-0.165 0.452
|
|
-0.271 0.396
|
|
1.471 0.844
|
|
-0.256 0.384
|
|
-0.758 0.228
|
|
-1.859 0.036
|
|
0.001 0.528
|
|
-0.098 0.412
|
|
-2.176 0.012
|
|
-1.416 0.084
|
|
-0.705 0.184
|
|
-0.696 0.200
|
|
0.211 0.596
|
|
1.841 0.908
|
|
-0.722 0.240
|
|
0.842 0.756
|
|
0.656 0.652
|
|
0.295 0.640
|
|
-2.105 0.020
|
|
-0.479 0.204
|
|
2.837 0.948
|
|
1.985 0.888
|
|
-0.200 0.400
|
|
1.560 0.860
|
|
1.135 0.836
|
|
-0.601 0.216
|
|
-0.639 0.220
|
|
2.231 0.920
|
|
-2.118 0.116
|
|
0.693 0.740
|
|
-1.787 0.008
|
|
1.723 0.872
|
|
2.110 0.896
|
|
0.045 0.444
|
|
0.480 0.576
|
|
0.325 0.616
|
|
-0.360 0.408
|
|
-0.487 0.328
|
|
0.985 0.712
|
|
-0.175 0.396
|
|
0.100 0.500
|
|
1.248 0.788
|
|
0.435 0.620
|
|
-0.718 0.220
|
|
-1.187 0.108
|
|
-0.192 0.396
|
|
-0.838 0.156
|
|
0.023 0.512
|
|
-0.469 0.256
|
|
-0.096 0.440
|
|
-0.805 0.200
|
|
0.294 0.584
|
|
2.222 0.956
|
|
0.542 0.696
|
|
-0.686 0.312
|
|
-0.696 0.172
|
|
0.669 0.652
|
|
0.258 0.580
|
|
-1.389 0.048
|
|
-0.927 0.140
|
|
0.535 0.660
|
|
-0.717 0.128
|
|
-0.741 0.208
|
|
-0.749 0.216
|
|
-0.586 0.236
|
|
2.391 0.928
|
|
-0.843 0.188
|
|
-0.338 0.380
|
|
-1.137 0.104
|
|
-1.279 0.068
|
|
-0.272 0.344
|
|
0.731 0.748
|
|
1.470 0.840
|
|
0.730 0.760
|
|
0.550 0.708
|
|
-1.340 0.068
|
|
-1.243 0.068
|
|
0.198 0.520
|
|
0.728 0.744
|
|
-0.098 0.360
|
|
-1.113 0.116
|
|
-0.860 0.164
|
|
-0.662 0.160
|
|
-0.221 0.428
|
|
1.247 0.792
|
|
0.565 0.720
|
|
-1.304 0.104
|
|
2.031 0.896
|
|
1.163 0.792
|
|
1.361 0.824
|
|
-0.579 0.256
|
|
|
|
junk1 <- scan(file="",list(i=0,base=0,one=0),nmax=60)
|
|
1 2.12 2.47
|
|
2 4.35 4.61
|
|
3 3.39 5.26
|
|
4 2.51 3.02
|
|
5 4.04 6.36
|
|
6 5.10 5.93
|
|
7 3.77 3.93
|
|
8 3.35 4.09
|
|
9 4.10 4.88
|
|
10 3.35 3.81
|
|
11 4.15 4.74
|
|
12 3.56 3.29
|
|
13 3.39 5.55
|
|
14 1.88 2.82
|
|
15 2.56 4.23
|
|
16 2.96 3.23
|
|
17 2.49 2.56
|
|
18 3.03 4.31
|
|
19 2.66 4.37
|
|
20 3.00 2.40
|
|
|
|
cd4.nested <- boot:::boot.return(sim="ordinary", t0=c(0,0.532),
|
|
t=cbind(junk[[1]],junk[[2]]), strata=rep(1,20), R=999,
|
|
data=data.frame(baseline=junk1$base,oneyear=junk1$one),
|
|
stat=temp$statistic, stype="w", call=tempcl, seed=NULL,
|
|
m=0, weights=rep(0.05,20))
|
|
|
|
|
|
rm(junk,junk1,temp,tempcl)
|
|
save(cd4.nested, file="cd4.nested.rda", compress=TRUE)
|