ComplexHeatmap-package	ComplexHeatmap-package
%v%	pct_v_pct
+.AdditiveUnit	add.AdditiveUnit
add.AdditiveUnit	add.AdditiveUnit
AdditiveUnit	AdditiveUnit
AdditiveUnit-class	AdditiveUnit-class
add_heatmap	add_heatmap-dispatch
add_heatmap,Heatmap-method	add_heatmap-Heatmap-method
add_heatmap,HeatmapAnnotation-method	add_heatmap-HeatmapAnnotation-method
add_heatmap,HeatmapList-method	add_heatmap-HeatmapList-method
adjust_dend_by_x	adjust_dend_by_x
adjust_heatmap_list	adjust_heatmap_list-HeatmapList-method
adjust_heatmap_list,HeatmapList-method	adjust_heatmap_list-HeatmapList-method
alter_graphic	alter_graphic
AnnotationFunction	AnnotationFunction
AnnotationFunction-class	AnnotationFunction-class
annotation_axis_grob	annotation_axis_grob
annotation_legend_size	annotation_legend_size-HeatmapList-method
annotation_legend_size,HeatmapList-method	annotation_legend_size-HeatmapList-method
anno_barplot	anno_barplot
anno_block	anno_block
anno_boxplot	anno_boxplot
anno_customize	anno_customize
anno_density	anno_density
anno_empty	anno_empty
anno_histogram	anno_histogram
anno_horizon	anno_horizon
anno_image	anno_image
anno_joyplot	anno_joyplot
anno_lines	anno_lines
anno_link	anno_link
anno_mark	anno_mark
anno_numeric	anno_numeric
anno_oncoprint_barplot	anno_oncoprint_barplot
anno_points	anno_points
anno_simple	anno_simple
anno_summary	anno_summary
anno_text	anno_text
anno_textbox	anno_textbox
anno_zoom	anno_zoom
attach_annotation	attach_annotation-Heatmap-method
attach_annotation,Heatmap-method	attach_annotation-Heatmap-method
bar3D	bar3D
bin_genome	bin_genome
c.ColorMapping	c.ColorMapping
c.HeatmapAnnotation	c.HeatmapAnnotation
cluster_between_groups	cluster_between_groups
cluster_within_group	cluster_within_group
ColorMapping	ColorMapping
ColorMapping-class	ColorMapping-class
color_mapping_legend	color_mapping_legend-ColorMapping-method
color_mapping_legend,ColorMapping-method	color_mapping_legend-ColorMapping-method
columnAnnotation	columnAnnotation
column_dend	column_dend-dispatch
column_dend,Heatmap-method	column_dend-Heatmap-method
column_dend,HeatmapList-method	column_dend-HeatmapList-method
column_order	column_order-dispatch
column_order,Heatmap-method	column_order-Heatmap-method
column_order,HeatmapList-method	column_order-HeatmapList-method
comb_degree	comb_degree
comb_name	comb_name
comb_size	comb_size
compare_heatmap	compare_heatmap
compare_heatmap.2	compare_heatmap.2
compare_pheatmap	compare_pheatmap
complement_size	complement_size
component_height	component_height-dispatch
component_height,Heatmap-method	component_height-Heatmap-method
component_height,HeatmapList-method	component_height-HeatmapList-method
component_width	component_width-dispatch
component_width,Heatmap-method	component_width-Heatmap-method
component_width,HeatmapList-method	component_width-HeatmapList-method
copy_all	copy_all-dispatch
copy_all,AnnotationFunction-method	copy_all-AnnotationFunction-method
copy_all,SingleAnnotation-method	copy_all-SingleAnnotation-method
decorate_annotation	decorate_annotation
decorate_column_dend	decorate_column_dend
decorate_column_names	decorate_column_names
decorate_column_title	decorate_column_title
decorate_dend	decorate_dend
decorate_dimnames	decorate_dimnames
decorate_heatmap_body	decorate_heatmap_body
decorate_row_dend	decorate_row_dend
decorate_row_names	decorate_row_names
decorate_row_title	decorate_row_title
decorate_title	decorate_title
default_axis_param	default_axis_param
default_get_type	default_get_type
dendrogramGrob	dendrogramGrob
dend_heights	dend_heights
dend_xy	dend_xy
densityHeatmap	densityHeatmap
dim.Heatmap	dim.Heatmap
dist2	dist2
draw	draw-dispatch
draw,AnnotationFunction-method	draw-AnnotationFunction-method
draw,Heatmap-method	draw-Heatmap-method
draw,HeatmapAnnotation-method	draw-HeatmapAnnotation-method
draw,HeatmapList-method	draw-HeatmapList-method
draw,Legends-method	draw-Legends-method
draw,SingleAnnotation-method	draw-SingleAnnotation-method
draw_annotation	draw_annotation-Heatmap-method
draw_annotation,Heatmap-method	draw_annotation-Heatmap-method
draw_annotation_legend	draw_annotation_legend-HeatmapList-method
draw_annotation_legend,HeatmapList-method	draw_annotation_legend-HeatmapList-method
draw_dend	draw_dend-Heatmap-method
draw_dend,Heatmap-method	draw_dend-Heatmap-method
draw_dimnames	draw_dimnames-Heatmap-method
draw_dimnames,Heatmap-method	draw_dimnames-Heatmap-method
draw_heatmap_body	draw_heatmap_body-Heatmap-method
draw_heatmap_body,Heatmap-method	draw_heatmap_body-Heatmap-method
draw_heatmap_legend	draw_heatmap_legend-HeatmapList-method
draw_heatmap_legend,HeatmapList-method	draw_heatmap_legend-HeatmapList-method
draw_heatmap_list	draw_heatmap_list-HeatmapList-method
draw_heatmap_list,HeatmapList-method	draw_heatmap_list-HeatmapList-method
draw_title	draw_title-dispatch
draw_title,Heatmap-method	draw_title-Heatmap-method
draw_title,HeatmapList-method	draw_title-HeatmapList-method
Extract.AnnotationFunction	Extract.AnnotationFunction
Extract.comb_mat	Extract.comb_mat
Extract.gridtext	Extract.gridtext
Extract.Heatmap	Extract.Heatmap
Extract.HeatmapAnnotation	Extract.HeatmapAnnotation
Extract.HeatmapList	Extract.HeatmapList
Extract.SingleAnnotation	Extract.SingleAnnotation
extract_comb	extract_comb
frequencyHeatmap	frequencyHeatmap
full_comb_code	full_comb_code
getXY_in_parent_vp	getXY_in_parent_vp
get_color_mapping_list	get_color_mapping_list-HeatmapAnnotation-method
get_color_mapping_list,HeatmapAnnotation-method	get_color_mapping_list-HeatmapAnnotation-method
get_legend_param_list	get_legend_param_list-HeatmapAnnotation-method
get_legend_param_list,HeatmapAnnotation-method	get_legend_param_list-HeatmapAnnotation-method
grid.annotation_axis	grid.annotation_axis
grid.boxplot	grid.boxplot
grid.dendrogram	grid.dendrogram
grid.draw.Legends	grid.draw.Legends
grid.textbox	grid.textbox
gt_render	gt_render
Heatmap	Heatmap
Heatmap-class	Heatmap-class
Heatmap3D	Heatmap3D
HeatmapAnnotation	HeatmapAnnotation
HeatmapAnnotation-class	HeatmapAnnotation-class
HeatmapList	HeatmapList
HeatmapList-class	HeatmapList-class
heatmap_legend_size	heatmap_legend_size-HeatmapList-method
heatmap_legend_size,HeatmapList-method	heatmap_legend_size-HeatmapList-method
height.AnnotationFunction	height.AnnotationFunction
height.Heatmap	height.Heatmap
height.HeatmapAnnotation	height.HeatmapAnnotation
height.HeatmapList	height.HeatmapList
height.Legends	height.Legends
height.SingleAnnotation	height.SingleAnnotation
height<-.AnnotationFunction	heightAssign.AnnotationFunction
height<-.HeatmapAnnotation	heightAssign.HeatmapAnnotation
height<-.SingleAnnotation	heightAssign.SingleAnnotation
heightAssign.AnnotationFunction	heightAssign.AnnotationFunction
heightAssign.HeatmapAnnotation	heightAssign.HeatmapAnnotation
heightAssign.SingleAnnotation	heightAssign.SingleAnnotation
heightDetails.annotation_axis	heightDetails.annotation_axis
heightDetails.legend	heightDetails.legend
heightDetails.legend_body	heightDetails.legend_body
heightDetails.packed_legends	heightDetails.packed_legends
heightDetails.textbox	heightDetails.textbox
ht_global_opt	ht_global_opt
ht_opt	ht_opt
ht_size	ht_size
is_abs_unit	is_abs_unit
Legend	Legend
Legends	Legends
Legends-class	Legends-class
length.HeatmapAnnotation	length.HeatmapAnnotation
length.HeatmapList	length.HeatmapList
list_components	list_components
list_to_matrix	list_to_matrix
make_column_cluster	make_column_cluster-Heatmap-method
make_column_cluster,Heatmap-method	make_column_cluster-Heatmap-method
make_comb_mat	make_comb_mat
make_layout	make_layout-dispatch
make_layout,Heatmap-method	make_layout-Heatmap-method
make_layout,HeatmapList-method	make_layout-HeatmapList-method
make_row_cluster	make_row_cluster-Heatmap-method
make_row_cluster,Heatmap-method	make_row_cluster-Heatmap-method
map_to_colors	map_to_colors-ColorMapping-method
map_to_colors,ColorMapping-method	map_to_colors-ColorMapping-method
max_text_height	max_text_height
max_text_width	max_text_width
merge_dendrogram	merge_dendrogram
names.HeatmapAnnotation	names.HeatmapAnnotation
names.HeatmapList	names.HeatmapList
names<-.HeatmapAnnotation	namesAssign.HeatmapAnnotation
namesAssign.HeatmapAnnotation	namesAssign.HeatmapAnnotation
ncol.Heatmap	ncol.Heatmap
nobs.AnnotationFunction	nobs.AnnotationFunction
nobs.HeatmapAnnotation	nobs.HeatmapAnnotation
nobs.SingleAnnotation	nobs.SingleAnnotation
normalize_comb_mat	normalize_comb_mat
normalize_genomic_signals_to_bins	normalize_genomic_signals_to_bins
nrow.Heatmap	nrow.Heatmap
oncoPrint	oncoPrint
order.comb_mat	order.comb_mat
packLegend	packLegend
pct_v_pct	pct_v_pct
pheatmap	pheatmap
pindex	pindex
plot.Heatmap	plot.Heatmap
plot.HeatmapAnnotation	plot.HeatmapAnnotation
plot.HeatmapList	plot.HeatmapList
prepare	prepare-Heatmap-method
prepare,Heatmap-method	prepare-Heatmap-method
print.comb_mat	print.comb_mat
restore_matrix	restore_matrix
re_size	re_size-HeatmapAnnotation-method
re_size,HeatmapAnnotation-method	re_size-HeatmapAnnotation-method
rowAnnotation	rowAnnotation
row_anno_barplot	row_anno_barplot
row_anno_boxplot	row_anno_boxplot
row_anno_density	row_anno_density
row_anno_histogram	row_anno_histogram
row_anno_points	row_anno_points
row_anno_text	row_anno_text
row_dend	row_dend-dispatch
row_dend,Heatmap-method	row_dend-Heatmap-method
row_dend,HeatmapList-method	row_dend-HeatmapList-method
row_order	row_order-dispatch
row_order,Heatmap-method	row_order-Heatmap-method
row_order,HeatmapList-method	row_order-HeatmapList-method
set_component_height	set_component_height-Heatmap-method
set_component_height,Heatmap-method	set_component_height-Heatmap-method
set_component_width	set_component_width-Heatmap-method
set_component_width,Heatmap-method	set_component_width-Heatmap-method
set_name	set_name
set_name<-	set_nameAssign
set_nameAssign	set_nameAssign
set_size	set_size
show	show-dispatch
show,AnnotationFunction-method	show-AnnotationFunction-method
show,ColorMapping-method	show-ColorMapping-method
show,Heatmap-method	show-Heatmap-method
show,HeatmapAnnotation-method	show-HeatmapAnnotation-method
show,HeatmapList-method	show-HeatmapList-method
show,SingleAnnotation-method	show-SingleAnnotation-method
SingleAnnotation	SingleAnnotation
SingleAnnotation-class	SingleAnnotation-class
size.AnnotationFunction	size.AnnotationFunction
size.HeatmapAnnotation	size.HeatmapAnnotation
size.SingleAnnotation	size.SingleAnnotation
size<-.AnnotationFunction	sizeAssign.AnnotationFunction
size<-.HeatmapAnnotation	sizeAssign.HeatmapAnnotation
size<-.SingleAnnotation	sizeAssign.SingleAnnotation
sizeAssign.AnnotationFunction	sizeAssign.AnnotationFunction
sizeAssign.HeatmapAnnotation	sizeAssign.HeatmapAnnotation
sizeAssign.SingleAnnotation	sizeAssign.SingleAnnotation
smartAlign2	smartAlign2
str.comb_mat	str.comb_mat
subset_gp	subset_gp
subset_matrix_by_row	subset_matrix_by_row
subset_no	subset_no
subset_vector	subset_vector
summary.Heatmap	summary.Heatmap
summary.HeatmapList	summary.HeatmapList
t.comb_mat	t.comb_mat
test_alter_fun	test_alter_fun
textbox_grob	textbox_grob
unify_mat_list	unify_mat_list
UpSet	UpSet
upset_left_annotation	upset_left_annotation
upset_right_annotation	upset_right_annotation
upset_top_annotation	upset_top_annotation
width.AnnotationFunction	width.AnnotationFunction
width.Heatmap	width.Heatmap
width.HeatmapAnnotation	width.HeatmapAnnotation
width.HeatmapList	width.HeatmapList
width.Legends	width.Legends
width.SingleAnnotation	width.SingleAnnotation
width<-.AnnotationFunction	widthAssign.AnnotationFunction
width<-.HeatmapAnnotation	widthAssign.HeatmapAnnotation
width<-.SingleAnnotation	widthAssign.SingleAnnotation
widthAssign.AnnotationFunction	widthAssign.AnnotationFunction
widthAssign.HeatmapAnnotation	widthAssign.HeatmapAnnotation
widthAssign.SingleAnnotation	widthAssign.SingleAnnotation
widthDetails.annotation_axis	widthDetails.annotation_axis
widthDetails.legend	widthDetails.legend
widthDetails.legend_body	widthDetails.legend_body
widthDetails.packed_legends	widthDetails.packed_legends
widthDetails.textbox	widthDetails.textbox
[.AnnotationFunction	Extract.AnnotationFunction
[.comb_mat	Extract.comb_mat
[.gridtext	Extract.gridtext
[.Heatmap	Extract.Heatmap
[.HeatmapAnnotation	Extract.HeatmapAnnotation
[.HeatmapList	Extract.HeatmapList
[.SingleAnnotation	Extract.SingleAnnotation