S3method("$", "CELL_META")
export("$.CELL_META")
S3method("names", "CELL_META")
export("names.CELL_META")
S3method("print", "CELL_META")
export("print.CELL_META")
export("CELL_META")
export("add_transparency")
export("adjacencyList2Matrix")
export("adjacencyMatrix2List")
export("arrange_links_evenly")
export("calc_gap")
export("chordDiagram")
export("chordDiagramFromDataFrame")
export("chordDiagramFromMatrix")
export("circlize")
export("circos.arrow")
export("circos.axis")
export("circos.barplot")
export("circos.boxplot")
export("circos.clear")
export("circos.connect")
export("circos.dendrogram")
export("circos.genomicAxis")
export("circos.genomicDensity")
export("circos.genomicHeatmap")
export("circos.genomicIdeogram")
export("circos.genomicInitialize")
export("circos.genomicLabels")
export("circos.genomicLines")
export("circos.genomicLink")
export("circos.genomicPoints")
export("circos.genomicPosTransformLines")
export("circos.genomicRainfall")
export("circos.genomicRect")
export("circos.genomicText")
export("circos.genomicTrack")
export("circos.genomicTrackPlotRegion")
export("circos.heatmap")
export("circos.heatmap.initialize")
export("circos.heatmap.link")
export("circos.info")
export("circos.initialize")
export("circos.initializeCircularGenome")
export("circos.initializeWithIdeogram")
export("circos.labels")
export("circos.lines")
export("circos.link")
export("circos.nested")
export("circos.par")
export("circos.points")
export("circos.polygon")
export("circos.raster")
export("circos.rect")
export("circos.segments")
export("circos.text")
export("circos.track")
export("circos.trackHist")
export("circos.trackLines")
export("circos.trackPlotRegion")
export("circos.trackPoints")
export("circos.trackText")
export("circos.triangle")
export("circos.update")
export("circos.updatePlotRegion")
export("circos.violin")
export("circos.xaxis")
export("circos.yaxis")
export("cm_h")
export("cm_x")
export("cm_y")
export("col2value")
export("colorRamp2")
export("convert_height")
export("convert_length")
export("convert_x")
export("convert_y")
export("cytoband.col")
export("degree")
export("draw.sector")
export("fontsize")
export("generateRandomBed")
export("genomicDensity")
export("get.all.sector.index")
export("get.all.track.index")
export("get.cell.meta.data")
export("get.current.chromosome")
export("get.current.sector.index")
export("get.current.track.index")
export("getI")
export("get_most_inside_radius")
export("highlight.chromosome")
export("highlight.sector")
export("inch_h")
export("inch_x")
export("inch_y")
export("inches_h")
export("inches_x")
export("inches_y")
export("mm_h")
export("mm_x")
export("mm_y")
export("posTransform.default")
export("posTransform.text")
export("rainfallTransform")
export("rand_color")
export("read.chromInfo")
export("read.cytoband")
export("reverse.circlize")
export("set.current.cell")
export("set_track_gap")
export("show.index")
export("smartAlign")
export("uh")
export("ux")
export("uy")

import("GlobalOptions")
import(graphics)
importFrom("colorspace", HLS)
importFrom("colorspace", HSV)
importFrom("colorspace", LAB)
importFrom("colorspace", LUV)
importFrom("colorspace", RGB)
importFrom("colorspace", XYZ)
importFrom("colorspace", coords)
importFrom("colorspace", hex)
importFrom("colorspace", hex2RGB)
importFrom("colorspace", sRGB)
importFrom("grDevices", "dev.cur", "dev.prev", "dev.set")
importFrom("grDevices", "dev.off", "pdf")
importFrom("grDevices", "hcl.colors")
importFrom("grDevices", as.raster)
importFrom("grDevices", col2rgb)
importFrom("grDevices", rgb)
importFrom("grid", grid.pretty)
importFrom("methods", as)
importFrom("shape", Arrowhead)
importFrom("stats", "as.dendrogram", "dist", "hclust", "order.dendrogram")
importFrom("stats", "as.hclust", "cutree")
importFrom("stats", "reorder")
importFrom("stats", rnorm)
importFrom("stats", runif)
importFrom("utils", download.file)
importFrom("utils", read.table, packageDescription)
importFrom("utils", "getFromNamespace")