circlize-package circlize-package $.CELL_META Subset.CELL_META add_transparency add_transparency adjacencyList2Matrix adjacencyList2Matrix adjacencyMatrix2List adjacencyMatrix2List arrange_links_evenly arrange_links_evenly calc_gap calc_gap CELL_META CELL_META chordDiagram chordDiagram chordDiagramFromDataFrame chordDiagramFromDataFrame chordDiagramFromMatrix chordDiagramFromMatrix circlize circlize circos.arrow circos.arrow circos.axis circos.axis circos.barplot circos.barplot circos.boxplot circos.boxplot circos.clear circos.clear circos.connect circos.connect circos.dendrogram circos.dendrogram circos.genomicAxis circos.genomicAxis circos.genomicDensity circos.genomicDensity circos.genomicHeatmap circos.genomicHeatmap circos.genomicIdeogram circos.genomicIdeogram circos.genomicInitialize circos.genomicInitialize circos.genomicLabels circos.genomicLabels circos.genomicLines circos.genomicLines circos.genomicLink circos.genomicLink circos.genomicPoints circos.genomicPoints circos.genomicPosTransformLines circos.genomicPosTransformLines circos.genomicRainfall circos.genomicRainfall circos.genomicRect circos.genomicRect circos.genomicText circos.genomicText circos.genomicTrack circos.genomicTrack circos.genomicTrackPlotRegion circos.genomicTrackPlotRegion circos.heatmap circos.heatmap circos.heatmap.initialize circos.heatmap.initialize circos.heatmap.link circos.heatmap.link circos.info circos.info circos.initialize circos.initialize circos.initializeCircularGenome circos.initializeCircularGenome circos.initializeWithIdeogram circos.initializeWithIdeogram circos.labels circos.labels circos.lines circos.lines circos.link circos.link circos.nested circos.nested circos.par circos.par circos.points circos.points circos.polygon circos.polygon circos.raster circos.raster circos.rect circos.rect circos.segments circos.segments circos.text circos.text circos.track circos.track circos.trackHist circos.trackHist circos.trackLines circos.trackLines circos.trackPlotRegion circos.trackPlotRegion circos.trackPoints circos.trackPoints circos.trackText circos.trackText circos.triangle circos.triangle circos.update circos.update circos.updatePlotRegion circos.updatePlotRegion circos.violin circos.violin circos.xaxis circos.xaxis circos.yaxis circos.yaxis cm_h cm_h cm_x cm_x cm_y cm_y col2value col2value colorRamp2 colorRamp2 convert_height convert_height convert_length convert_length convert_x convert_x convert_y convert_y cytoband.col cytoband.col degree degree draw.sector draw.sector fontsize fontsize generateRandomBed generateRandomBed genomicDensity genomicDensity get.all.sector.index get.all.sector.index get.all.track.index get.all.track.index get.cell.meta.data get.cell.meta.data get.current.chromosome get.current.chromosome get.current.sector.index get.current.sector.index get.current.track.index get.current.track.index getI getI get_most_inside_radius get_most_inside_radius highlight.chromosome highlight.chromosome highlight.sector highlight.sector inches_h inches_h inches_x inches_x inches_y inches_y inch_h inch_h inch_x inch_x inch_y inch_y mm_h mm_h mm_x mm_x mm_y mm_y names.CELL_META names.CELL_META posTransform.default posTransform.default posTransform.text posTransform.text print.CELL_META print.CELL_META rainfallTransform rainfallTransform rand_color rand_color read.chromInfo read.chromInfo read.cytoband read.cytoband reverse.circlize reverse.circlize set.current.cell set.current.cell set_track_gap set_track_gap show.index show.index smartAlign smartAlign Subset.CELL_META Subset.CELL_META uh uh ux ux uy uy