295 lines
12 KiB
Plaintext
295 lines
12 KiB
Plaintext
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ComplexHeatmap-package ComplexHeatmap-package
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%v% pct_v_pct
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+.AdditiveUnit add.AdditiveUnit
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add.AdditiveUnit add.AdditiveUnit
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AdditiveUnit AdditiveUnit
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AdditiveUnit-class AdditiveUnit-class
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add_heatmap add_heatmap-dispatch
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add_heatmap,Heatmap-method add_heatmap-Heatmap-method
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add_heatmap,HeatmapAnnotation-method add_heatmap-HeatmapAnnotation-method
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add_heatmap,HeatmapList-method add_heatmap-HeatmapList-method
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adjust_dend_by_x adjust_dend_by_x
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adjust_heatmap_list adjust_heatmap_list-HeatmapList-method
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adjust_heatmap_list,HeatmapList-method adjust_heatmap_list-HeatmapList-method
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alter_graphic alter_graphic
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AnnotationFunction AnnotationFunction
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AnnotationFunction-class AnnotationFunction-class
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annotation_axis_grob annotation_axis_grob
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annotation_legend_size annotation_legend_size-HeatmapList-method
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annotation_legend_size,HeatmapList-method annotation_legend_size-HeatmapList-method
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anno_barplot anno_barplot
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anno_block anno_block
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anno_boxplot anno_boxplot
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anno_customize anno_customize
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anno_density anno_density
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anno_empty anno_empty
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anno_histogram anno_histogram
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anno_horizon anno_horizon
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anno_image anno_image
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anno_joyplot anno_joyplot
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anno_lines anno_lines
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anno_link anno_link
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anno_mark anno_mark
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anno_numeric anno_numeric
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anno_oncoprint_barplot anno_oncoprint_barplot
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anno_points anno_points
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anno_simple anno_simple
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anno_summary anno_summary
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anno_text anno_text
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anno_textbox anno_textbox
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anno_zoom anno_zoom
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attach_annotation attach_annotation-Heatmap-method
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attach_annotation,Heatmap-method attach_annotation-Heatmap-method
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bar3D bar3D
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bin_genome bin_genome
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c.ColorMapping c.ColorMapping
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c.HeatmapAnnotation c.HeatmapAnnotation
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cluster_between_groups cluster_between_groups
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cluster_within_group cluster_within_group
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ColorMapping ColorMapping
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ColorMapping-class ColorMapping-class
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color_mapping_legend color_mapping_legend-ColorMapping-method
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color_mapping_legend,ColorMapping-method color_mapping_legend-ColorMapping-method
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columnAnnotation columnAnnotation
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column_dend column_dend-dispatch
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column_dend,Heatmap-method column_dend-Heatmap-method
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column_dend,HeatmapList-method column_dend-HeatmapList-method
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column_order column_order-dispatch
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column_order,Heatmap-method column_order-Heatmap-method
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column_order,HeatmapList-method column_order-HeatmapList-method
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comb_degree comb_degree
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comb_name comb_name
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comb_size comb_size
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compare_heatmap compare_heatmap
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compare_heatmap.2 compare_heatmap.2
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compare_pheatmap compare_pheatmap
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complement_size complement_size
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component_height component_height-dispatch
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component_height,Heatmap-method component_height-Heatmap-method
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component_height,HeatmapList-method component_height-HeatmapList-method
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component_width component_width-dispatch
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component_width,Heatmap-method component_width-Heatmap-method
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component_width,HeatmapList-method component_width-HeatmapList-method
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copy_all copy_all-dispatch
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copy_all,AnnotationFunction-method copy_all-AnnotationFunction-method
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copy_all,SingleAnnotation-method copy_all-SingleAnnotation-method
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decorate_annotation decorate_annotation
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decorate_column_dend decorate_column_dend
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decorate_column_names decorate_column_names
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decorate_column_title decorate_column_title
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decorate_dend decorate_dend
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decorate_dimnames decorate_dimnames
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decorate_heatmap_body decorate_heatmap_body
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decorate_row_dend decorate_row_dend
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decorate_row_names decorate_row_names
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decorate_row_title decorate_row_title
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decorate_title decorate_title
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default_axis_param default_axis_param
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default_get_type default_get_type
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dendrogramGrob dendrogramGrob
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dend_heights dend_heights
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dend_xy dend_xy
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densityHeatmap densityHeatmap
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dim.Heatmap dim.Heatmap
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dist2 dist2
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draw draw-dispatch
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draw,AnnotationFunction-method draw-AnnotationFunction-method
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draw,Heatmap-method draw-Heatmap-method
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draw,HeatmapAnnotation-method draw-HeatmapAnnotation-method
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draw,HeatmapList-method draw-HeatmapList-method
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draw,Legends-method draw-Legends-method
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draw,SingleAnnotation-method draw-SingleAnnotation-method
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draw_annotation draw_annotation-Heatmap-method
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draw_annotation,Heatmap-method draw_annotation-Heatmap-method
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draw_annotation_legend draw_annotation_legend-HeatmapList-method
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draw_annotation_legend,HeatmapList-method draw_annotation_legend-HeatmapList-method
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draw_dend draw_dend-Heatmap-method
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draw_dend,Heatmap-method draw_dend-Heatmap-method
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draw_dimnames draw_dimnames-Heatmap-method
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draw_dimnames,Heatmap-method draw_dimnames-Heatmap-method
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draw_heatmap_body draw_heatmap_body-Heatmap-method
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draw_heatmap_body,Heatmap-method draw_heatmap_body-Heatmap-method
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draw_heatmap_legend draw_heatmap_legend-HeatmapList-method
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draw_heatmap_legend,HeatmapList-method draw_heatmap_legend-HeatmapList-method
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draw_heatmap_list draw_heatmap_list-HeatmapList-method
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draw_heatmap_list,HeatmapList-method draw_heatmap_list-HeatmapList-method
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draw_title draw_title-dispatch
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draw_title,Heatmap-method draw_title-Heatmap-method
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draw_title,HeatmapList-method draw_title-HeatmapList-method
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Extract.AnnotationFunction Extract.AnnotationFunction
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Extract.comb_mat Extract.comb_mat
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Extract.gridtext Extract.gridtext
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Extract.Heatmap Extract.Heatmap
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Extract.HeatmapAnnotation Extract.HeatmapAnnotation
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Extract.HeatmapList Extract.HeatmapList
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Extract.SingleAnnotation Extract.SingleAnnotation
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extract_comb extract_comb
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frequencyHeatmap frequencyHeatmap
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full_comb_code full_comb_code
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getXY_in_parent_vp getXY_in_parent_vp
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get_color_mapping_list get_color_mapping_list-HeatmapAnnotation-method
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get_color_mapping_list,HeatmapAnnotation-method get_color_mapping_list-HeatmapAnnotation-method
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get_legend_param_list get_legend_param_list-HeatmapAnnotation-method
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get_legend_param_list,HeatmapAnnotation-method get_legend_param_list-HeatmapAnnotation-method
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grid.annotation_axis grid.annotation_axis
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grid.boxplot grid.boxplot
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grid.dendrogram grid.dendrogram
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grid.draw.Legends grid.draw.Legends
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grid.textbox grid.textbox
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gt_render gt_render
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Heatmap Heatmap
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Heatmap-class Heatmap-class
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Heatmap3D Heatmap3D
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HeatmapAnnotation HeatmapAnnotation
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HeatmapAnnotation-class HeatmapAnnotation-class
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HeatmapList HeatmapList
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HeatmapList-class HeatmapList-class
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heatmap_legend_size heatmap_legend_size-HeatmapList-method
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heatmap_legend_size,HeatmapList-method heatmap_legend_size-HeatmapList-method
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height.AnnotationFunction height.AnnotationFunction
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height.Heatmap height.Heatmap
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height.HeatmapAnnotation height.HeatmapAnnotation
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height.HeatmapList height.HeatmapList
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height.Legends height.Legends
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height.SingleAnnotation height.SingleAnnotation
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height<-.AnnotationFunction heightAssign.AnnotationFunction
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height<-.HeatmapAnnotation heightAssign.HeatmapAnnotation
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height<-.SingleAnnotation heightAssign.SingleAnnotation
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heightAssign.AnnotationFunction heightAssign.AnnotationFunction
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heightAssign.HeatmapAnnotation heightAssign.HeatmapAnnotation
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heightAssign.SingleAnnotation heightAssign.SingleAnnotation
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heightDetails.annotation_axis heightDetails.annotation_axis
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heightDetails.legend heightDetails.legend
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heightDetails.legend_body heightDetails.legend_body
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heightDetails.packed_legends heightDetails.packed_legends
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heightDetails.textbox heightDetails.textbox
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ht_global_opt ht_global_opt
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ht_opt ht_opt
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ht_size ht_size
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is_abs_unit is_abs_unit
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Legend Legend
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Legends Legends
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Legends-class Legends-class
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length.HeatmapAnnotation length.HeatmapAnnotation
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length.HeatmapList length.HeatmapList
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list_components list_components
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list_to_matrix list_to_matrix
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make_column_cluster make_column_cluster-Heatmap-method
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make_column_cluster,Heatmap-method make_column_cluster-Heatmap-method
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make_comb_mat make_comb_mat
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make_layout make_layout-dispatch
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make_layout,Heatmap-method make_layout-Heatmap-method
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make_layout,HeatmapList-method make_layout-HeatmapList-method
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make_row_cluster make_row_cluster-Heatmap-method
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make_row_cluster,Heatmap-method make_row_cluster-Heatmap-method
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map_to_colors map_to_colors-ColorMapping-method
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map_to_colors,ColorMapping-method map_to_colors-ColorMapping-method
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max_text_height max_text_height
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max_text_width max_text_width
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merge_dendrogram merge_dendrogram
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names.HeatmapAnnotation names.HeatmapAnnotation
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names.HeatmapList names.HeatmapList
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names<-.HeatmapAnnotation namesAssign.HeatmapAnnotation
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namesAssign.HeatmapAnnotation namesAssign.HeatmapAnnotation
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ncol.Heatmap ncol.Heatmap
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nobs.AnnotationFunction nobs.AnnotationFunction
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nobs.HeatmapAnnotation nobs.HeatmapAnnotation
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nobs.SingleAnnotation nobs.SingleAnnotation
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normalize_comb_mat normalize_comb_mat
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normalize_genomic_signals_to_bins normalize_genomic_signals_to_bins
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nrow.Heatmap nrow.Heatmap
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oncoPrint oncoPrint
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order.comb_mat order.comb_mat
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packLegend packLegend
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pct_v_pct pct_v_pct
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pheatmap pheatmap
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pindex pindex
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plot.Heatmap plot.Heatmap
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plot.HeatmapAnnotation plot.HeatmapAnnotation
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plot.HeatmapList plot.HeatmapList
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prepare prepare-Heatmap-method
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prepare,Heatmap-method prepare-Heatmap-method
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print.comb_mat print.comb_mat
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restore_matrix restore_matrix
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re_size re_size-HeatmapAnnotation-method
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re_size,HeatmapAnnotation-method re_size-HeatmapAnnotation-method
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rowAnnotation rowAnnotation
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row_anno_barplot row_anno_barplot
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row_anno_boxplot row_anno_boxplot
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row_anno_density row_anno_density
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row_anno_histogram row_anno_histogram
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row_anno_points row_anno_points
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row_anno_text row_anno_text
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row_dend row_dend-dispatch
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row_dend,Heatmap-method row_dend-Heatmap-method
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row_dend,HeatmapList-method row_dend-HeatmapList-method
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row_order row_order-dispatch
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row_order,Heatmap-method row_order-Heatmap-method
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row_order,HeatmapList-method row_order-HeatmapList-method
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set_component_height set_component_height-Heatmap-method
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set_component_height,Heatmap-method set_component_height-Heatmap-method
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set_component_width set_component_width-Heatmap-method
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set_component_width,Heatmap-method set_component_width-Heatmap-method
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set_name set_name
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set_name<- set_nameAssign
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set_nameAssign set_nameAssign
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set_size set_size
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show show-dispatch
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show,AnnotationFunction-method show-AnnotationFunction-method
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show,ColorMapping-method show-ColorMapping-method
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show,Heatmap-method show-Heatmap-method
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show,HeatmapAnnotation-method show-HeatmapAnnotation-method
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show,HeatmapList-method show-HeatmapList-method
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show,SingleAnnotation-method show-SingleAnnotation-method
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SingleAnnotation SingleAnnotation
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SingleAnnotation-class SingleAnnotation-class
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size.AnnotationFunction size.AnnotationFunction
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size.HeatmapAnnotation size.HeatmapAnnotation
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size.SingleAnnotation size.SingleAnnotation
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size<-.AnnotationFunction sizeAssign.AnnotationFunction
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size<-.HeatmapAnnotation sizeAssign.HeatmapAnnotation
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size<-.SingleAnnotation sizeAssign.SingleAnnotation
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sizeAssign.AnnotationFunction sizeAssign.AnnotationFunction
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sizeAssign.HeatmapAnnotation sizeAssign.HeatmapAnnotation
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sizeAssign.SingleAnnotation sizeAssign.SingleAnnotation
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smartAlign2 smartAlign2
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str.comb_mat str.comb_mat
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subset_gp subset_gp
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subset_matrix_by_row subset_matrix_by_row
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subset_no subset_no
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subset_vector subset_vector
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summary.Heatmap summary.Heatmap
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summary.HeatmapList summary.HeatmapList
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t.comb_mat t.comb_mat
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test_alter_fun test_alter_fun
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textbox_grob textbox_grob
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unify_mat_list unify_mat_list
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UpSet UpSet
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upset_left_annotation upset_left_annotation
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upset_right_annotation upset_right_annotation
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upset_top_annotation upset_top_annotation
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width.AnnotationFunction width.AnnotationFunction
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width.Heatmap width.Heatmap
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width.HeatmapAnnotation width.HeatmapAnnotation
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width.HeatmapList width.HeatmapList
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width.Legends width.Legends
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width.SingleAnnotation width.SingleAnnotation
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width<-.AnnotationFunction widthAssign.AnnotationFunction
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width<-.HeatmapAnnotation widthAssign.HeatmapAnnotation
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width<-.SingleAnnotation widthAssign.SingleAnnotation
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widthAssign.AnnotationFunction widthAssign.AnnotationFunction
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widthAssign.HeatmapAnnotation widthAssign.HeatmapAnnotation
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widthAssign.SingleAnnotation widthAssign.SingleAnnotation
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widthDetails.annotation_axis widthDetails.annotation_axis
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widthDetails.legend widthDetails.legend
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widthDetails.legend_body widthDetails.legend_body
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widthDetails.packed_legends widthDetails.packed_legends
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widthDetails.textbox widthDetails.textbox
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[.AnnotationFunction Extract.AnnotationFunction
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[.comb_mat Extract.comb_mat
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[.gridtext Extract.gridtext
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[.Heatmap Extract.Heatmap
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[.HeatmapAnnotation Extract.HeatmapAnnotation
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[.HeatmapList Extract.HeatmapList
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[.SingleAnnotation Extract.SingleAnnotation
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