151 lines
8.2 KiB
Plaintext
151 lines
8.2 KiB
Plaintext
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Math.Surv Methods for Surv objects
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Surv Create a Survival Object
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Surv2 Create a survival object
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Surv2data Convert data from timecourse to (time1,time2)
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style
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aareg Aalen's additive regression model for censored
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data
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aeqSurv Adjudicate near ties in a Surv object
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aggregate.survfit Average survival curves
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agreg.fit Cox model fitting functions
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aml Acute Myelogenous Leukemia survival data
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anova.coxph Analysis of Deviance for a Cox model.
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attrassign Create new-style "assign" attribute
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basehaz Alias for the survfit function
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bladder Bladder Cancer Recurrences
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blogit Bounded link functions
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brier Compute the Brier score for a Cox model
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cch Fits proportional hazards regression model to
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case-cohort data
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cgd Chronic Granulotamous Disease data
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cgd0 Chronic Granulotomous Disease data
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cipoisson Confidence limits for the Poisson
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clogit Conditional logistic regression
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cluster Identify clusters.
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colon Chemotherapy for Stage B/C colon cancer
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concordance Compute the concordance statistic for data or a
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model
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concordancefit Compute the concordance
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cox.zph Test the Proportional Hazards Assumption of a
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Cox Regression
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coxph Fit Proportional Hazards Regression Model
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coxph.control Ancillary arguments for controlling coxph fits
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coxph.detail Details of a Cox Model Fit
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coxph.object Proportional Hazards Regression Object
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coxph.wtest Compute a quadratic form
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coxphms.object Multi-state Proportional Hazards Regression
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Object
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coxsurv.fit A direct interface to the 'computational
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engine' of survfit.coxph
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diabetic Ddiabetic retinopathy
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dsurvreg Distributions available in survreg.
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finegray Create data for a Fine-Gray model
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flchain Assay of serum free light chain for 7874
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subjects.
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frailty Random effects terms
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gbsg Breast cancer data sets used in Royston and
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Altman (2013)
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heart Stanford Heart Transplant data
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hoel Mouse cancer data
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is.ratetable Verify that an object is of class ratetable.
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kidney Kidney catheter data
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levels.Surv Return the states of a multi-state Surv object
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lines.survfit Add Lines or Points to a Survival Plot
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logLik.coxph logLik method for a Cox model
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logan Data from the 1972-78 GSS data used by Logan
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lung NCCTG Lung Cancer Data
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mgus Monoclonal gammopathy data
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mgus2 Monoclonal gammopathy data
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model.frame.coxph Model.frame method for coxph objects
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model.matrix.coxph Model.matrix method for coxph models
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myeloid Acute myeloid leukemia
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myeloma Survival times of patients with multiple
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myeloma
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nafld1 Non-alcoholic fatty liver disease
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neardate Find the index of the closest value in data set
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2, for each entry in data set one.
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nsk Natural splines with knot heights as the basis.
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nwtco Data from the National Wilm's Tumor Study
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ovarian Ovarian Cancer Survival Data
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pbc Mayo Clinic Primary Biliary Cholangitis Data
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pbcseq Mayo Clinic Primary Biliary Cirrhosis,
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sequential data
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plot.aareg Plot an aareg object.
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plot.cox.zph Graphical Test of Proportional Hazards
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plot.survfit Plot method for 'survfit' objects
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predict.coxph Predictions for a Cox model
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predict.survreg Predicted Values for a 'survreg' Object
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print.aareg Print an aareg object
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print.summary.coxph Print method for summary.coxph objects
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print.summary.survexp Print Survexp Summary
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print.summary.survfit Print Survfit Summary
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print.survfit Print a Short Summary of a Survival Curve
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pseudo Pseudo values for survival.
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pspline Smoothing splines using a pspline basis
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pyears Person Years
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quantile.survfit Quantiles from a survfit object
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ratetable Allow ratetable() terms in a model
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ratetableDate Convert date objects to ratetable form
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rats Rat treatment data from Mantel et al
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rats2 Rat data from Gail et al.
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reliability Reliability data sets
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residuals.coxph Calculate Residuals for a 'coxph' Fit
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residuals.survfit IJ residuals from a survfit object.
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residuals.survreg Compute Residuals for 'survreg' Objects
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retinopathy Diabetic Retinopathy
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rhDNase rhDNASE data set
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ridge Ridge regression
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rotterdam Breast cancer data set used in Royston and
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Altman (2013)
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royston Compute Royston's D for a Cox model
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rttright Compute redistribute-to-the-right weights
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solder Data from a soldering experiment
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stanford2 More Stanford Heart Transplant data
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statefig Draw a state space figure.
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strata Identify Stratification Variables
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summary.aareg Summarize an aareg fit
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summary.coxph Summary method for Cox models
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summary.pyears Summary function for pyears objecs
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summary.survexp Summary function for a survexp object
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summary.survfit Summary of a Survival Curve
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survSplit Split a survival data set at specified times
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survcheck Checks of a survival data set
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survcondense Shorten a (time1, time2) survival dataset
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survdiff Test Survival Curve Differences
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survexp Compute Expected Survival
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survexp.fit Compute Expected Survival
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survexp.object Expected Survival Curve Object
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survexp.us Census Data Sets for the Expected Survival and
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Person Years Functions
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survfit Create survival curves
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survfit.coxph Compute a Survival Curve from a Cox model
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survfit.formula Compute a Survival Curve for Censored Data
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survfit.matrix Create Aalen-Johansen estimates of multi-state
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survival from a matrix of hazards.
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survfit.object Survival Curve Object
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survfit0 Convert the format of a survfit object.
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survfitcoxph.fit A direct interface to the 'computational
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engine' of survfit.coxph
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survival-deprecated Deprecated functions in package 'survival'
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survobrien O'Brien's Test for Association of a Single
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Variable with Survival
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survreg Regression for a Parametric Survival Model
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survreg.control Package options for survreg and coxph
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survreg.distributions Parametric Survival Distributions
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survreg.object Parametric Survival Model Object
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survregDtest Verify a survreg distribution
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tcut Factors for person-year calculations
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tmerge Time based merge for survival data
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tobin Tobin's Tobit data
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transplant Liver transplant waiting list
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udca Data from a trial of usrodeoxycholic acid
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untangle.specials Help Process the 'specials' Argument of the
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'terms' Function.
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uspop2 Projected US Population
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vcov.coxph Variance-covariance matrix
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veteran Veterans' Administration Lung Cancer study
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xtfrm.Surv Sorting order for Surv objects
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yates Population prediction
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yates_setup Method for adding new models to the 'yates'
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function.
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