184 lines
3.9 KiB
Plaintext
184 lines
3.9 KiB
Plaintext
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BiocGenerics-package BiocGenerics-package
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%in% match
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annotation annotation
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annotation<- annotation
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anyDuplicated duplicated
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aperm aperm
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append append
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as.data.frame as.data.frame
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as.list as.list
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as.vector as.vector
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AsIs-class S3-classes-as-S4-classes
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basename path
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basename,ANY-method path
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basename<- path
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basename<-,ANY-method path
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basename<-,character-method path
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BiocGenerics BiocGenerics-package
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boxplot boxplot
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bzfile-class S3-classes-as-S4-classes
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cbind cbind
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character_OR_connection-class S3-classes-as-S4-classes
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class:OutOfMemoryObject containsOutOfMemoryData
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colnames row_colnames
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colnames<- row_colnames
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combine combine
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combine,ANY,missing-method combine
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combine,data.frame,data.frame-method combine
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combine,matrix,matrix-method combine
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conditions dge
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conditions<- dge
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connection-class S3-classes-as-S4-classes
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containsOutOfMemoryData containsOutOfMemoryData
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containsOutOfMemoryData,ANY-method containsOutOfMemoryData
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containsOutOfMemoryData,environment-method containsOutOfMemoryData
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containsOutOfMemoryData,list-method containsOutOfMemoryData
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containsOutOfMemoryData,OutOfMemoryObject-method containsOutOfMemoryData
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counts dge
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counts<- dge
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dbconn dbconn
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dbfile dbconn
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density density
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design dge
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design<- dge
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dge dge
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dims dims
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dirname path
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dirname,ANY-method path
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dirname<- path
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dirname<-,ANY-method path
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dirname<-,character-method path
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dispTable dge
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dispTable<- dge
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dist-class S3-classes-as-S4-classes
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do.call do.call
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duplicated duplicated
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end start
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end<- start
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estimateDispersions dge
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estimateSizeFactors dge
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eval eval
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evalq evalq
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Extremes Extremes
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fifo-class S3-classes-as-S4-classes
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file-class S3-classes-as-S4-classes
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fileName fileName
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Filter funprog
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Find funprog
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format format
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format.list format
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funprog funprog
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get get
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getObjectSlots updateObject
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grep grep
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grepl grep
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gzcon-class S3-classes-as-S4-classes
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gzfile-class S3-classes-as-S4-classes
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image image
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intersect sets
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invertStrand strand
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invertStrand,ANY-method strand
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IQR IQR
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is.unsorted is.unsorted
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lapply lapply
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mad mad
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Map funprog
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mapply mapply
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match match
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mean mean
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mget get
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NCOL nrow
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ncol nrow
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ncols dims
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normalize normalize
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NROW nrow
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nrow nrow
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nrows dims
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Ontology Ontology
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order order
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organism organism_species
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organism<- organism_species
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organism_species organism_species
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OutOfMemoryObject containsOutOfMemoryData
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OutOfMemoryObject-class containsOutOfMemoryData
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paste paste
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path path
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path<- path
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pipe-class S3-classes-as-S4-classes
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plotDispEsts dge
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plotMA plotMA
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plotMA,ANY-method plotMA
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plotPCA plotPCA
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pmax Extremes
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pmax.int Extremes
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pmin Extremes
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pmin.int Extremes
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pos start
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Position funprog
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rank rank
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rbind cbind
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Reduce funprog
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relist relist
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rep.int rep
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residuals residuals
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row+colnames row_colnames
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rownames row_colnames
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rownames<- row_colnames
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S3-classes-as-S4-classes S3-classes-as-S4-classes
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sapply lapply
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saveRDS saveRDS
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saveRDS,ANY-method saveRDS
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score score
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score<- score
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sd var
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setdiff sets
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sets sets
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sizeFactors dge
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sizeFactors<- dge
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sockconn-class S3-classes-as-S4-classes
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sort sort
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species organism_species
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species<- organism_species
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start start
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start<- start
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strand strand
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strand<- strand
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subset subset
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t t
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table table
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tapply tapply
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terminal-class S3-classes-as-S4-classes
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testPackage testPackage
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textConnection-class S3-classes-as-S4-classes
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toTable toTable
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type type
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type,array-method type
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type,data.frame-method type
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type,factor-method type
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type,vector-method type
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type<- type
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type<-,array-method type
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type<-,vector-method type
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union sets
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unique unique
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unlist unlist
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unsplit unsplit
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unstrand strand
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unz-class S3-classes-as-S4-classes
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updateObject updateObject
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updateObject,ANY-method updateObject
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updateObject,environment-method updateObject
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updateObject,envRefClass-method updateObject
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updateObject,formula-method updateObject
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updateObject,list-method updateObject
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updateObjectFromSlots updateObject
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url-class S3-classes-as-S4-classes
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var var
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weights weights
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which which
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which.max which.min
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which.min which.min
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width start
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width<- start
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xtabs xtabs
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