147 lines
3.9 KiB
Plaintext
147 lines
3.9 KiB
Plaintext
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S3method("$", "CELL_META")
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export("$.CELL_META")
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S3method("names", "CELL_META")
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export("names.CELL_META")
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S3method("print", "CELL_META")
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export("print.CELL_META")
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export("CELL_META")
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export("add_transparency")
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export("adjacencyList2Matrix")
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export("adjacencyMatrix2List")
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export("arrange_links_evenly")
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export("calc_gap")
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export("chordDiagram")
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export("chordDiagramFromDataFrame")
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export("chordDiagramFromMatrix")
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export("circlize")
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export("circos.arrow")
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export("circos.axis")
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export("circos.barplot")
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export("circos.boxplot")
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export("circos.clear")
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export("circos.connect")
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export("circos.dendrogram")
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export("circos.genomicAxis")
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export("circos.genomicDensity")
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export("circos.genomicHeatmap")
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export("circos.genomicIdeogram")
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export("circos.genomicInitialize")
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export("circos.genomicLabels")
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export("circos.genomicLines")
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export("circos.genomicLink")
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export("circos.genomicPoints")
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export("circos.genomicPosTransformLines")
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export("circos.genomicRainfall")
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export("circos.genomicRect")
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export("circos.genomicText")
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export("circos.genomicTrack")
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export("circos.genomicTrackPlotRegion")
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export("circos.heatmap")
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export("circos.heatmap.initialize")
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export("circos.heatmap.link")
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export("circos.info")
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export("circos.initialize")
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export("circos.initializeCircularGenome")
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export("circos.initializeWithIdeogram")
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export("circos.labels")
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export("circos.lines")
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export("circos.link")
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export("circos.nested")
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export("circos.par")
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export("circos.points")
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export("circos.polygon")
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export("circos.raster")
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export("circos.rect")
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export("circos.segments")
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export("circos.text")
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export("circos.track")
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export("circos.trackHist")
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export("circos.trackLines")
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export("circos.trackPlotRegion")
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export("circos.trackPoints")
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export("circos.trackText")
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export("circos.triangle")
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export("circos.update")
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export("circos.updatePlotRegion")
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export("circos.violin")
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export("circos.xaxis")
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export("circos.yaxis")
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export("cm_h")
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export("cm_x")
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export("cm_y")
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export("col2value")
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export("colorRamp2")
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export("convert_height")
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export("convert_length")
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export("convert_x")
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export("convert_y")
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export("cytoband.col")
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export("degree")
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export("draw.sector")
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export("fontsize")
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export("generateRandomBed")
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export("genomicDensity")
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export("get.all.sector.index")
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export("get.all.track.index")
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export("get.cell.meta.data")
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export("get.current.chromosome")
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export("get.current.sector.index")
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export("get.current.track.index")
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export("getI")
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export("get_most_inside_radius")
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export("highlight.chromosome")
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export("highlight.sector")
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export("inch_h")
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export("inch_x")
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export("inch_y")
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export("inches_h")
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export("inches_x")
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export("inches_y")
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export("mm_h")
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export("mm_x")
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export("mm_y")
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export("posTransform.default")
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export("posTransform.text")
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export("rainfallTransform")
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export("rand_color")
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export("read.chromInfo")
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export("read.cytoband")
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export("reverse.circlize")
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export("set.current.cell")
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export("set_track_gap")
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export("show.index")
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export("smartAlign")
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export("uh")
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export("ux")
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export("uy")
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import("GlobalOptions")
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import(graphics)
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importFrom("colorspace", HLS)
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importFrom("colorspace", HSV)
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importFrom("colorspace", LAB)
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importFrom("colorspace", LUV)
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importFrom("colorspace", RGB)
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importFrom("colorspace", XYZ)
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importFrom("colorspace", coords)
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importFrom("colorspace", hex)
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importFrom("colorspace", hex2RGB)
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importFrom("colorspace", sRGB)
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importFrom("grDevices", "dev.cur", "dev.prev", "dev.set")
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importFrom("grDevices", "dev.off", "pdf")
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importFrom("grDevices", "hcl.colors")
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importFrom("grDevices", as.raster)
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importFrom("grDevices", col2rgb)
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importFrom("grDevices", rgb)
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importFrom("grid", grid.pretty)
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importFrom("methods", as)
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importFrom("shape", Arrowhead)
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importFrom("stats", "as.dendrogram", "dist", "hclust", "order.dendrogram")
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importFrom("stats", "as.hclust", "cutree")
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importFrom("stats", "reorder")
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importFrom("stats", rnorm)
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importFrom("stats", runif)
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importFrom("utils", download.file)
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importFrom("utils", read.table, packageDescription)
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importFrom("utils", "getFromNamespace")
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