259 lines
12 KiB
Plaintext
259 lines
12 KiB
Plaintext
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#
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# Homo sapiens chromosome Y, reference assembly, complete sequence
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#
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# This file provides assembly instructions for sequence NC_000024
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# included in reference assembly of NCBI build 36 (HGSC Finished Genome v4.0).
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#
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#chrom chr_start chr_stop part_no part_type comp_id/gap_len comp_type/gap_type comp_end/linkage orientation/empty
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chrY 1 34821 1 F BX640545.2 1 34821 +
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chrY 34822 84821 2 N 50000 contig no
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chrY 84822 122592 3 F AL954722.18 1 37771 +
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chrY 122593 157464 4 F BX537334.4 1 34872 -
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chrY 157465 171384 5 F BX000483.7 1999 15918 +
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chrY 171385 201384 6 N 30000 contig no
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chrY 201385 232395 7 F AL954664.17 8190 39200 -
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chrY 232396 265528 8 F BX000476.5 208 33340 +
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chrY 265529 482251 9 F AL732314.18 2001 218723 +
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chrY 482252 550112 10 F BX004827.18 51695 119555 +
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chrY 550113 723877 11 F AL683871.15 2001 175765 +
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chrY 723878 837875 12 F AL672311.26 2001 115998 +
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chrY 837876 967557 13 F AL672277.20 2001 131682 +
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chrY 967558 1017557 14 N 50000 contig no
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chrY 1017558 1054113 15 F BX908402.3 1 36556 +
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chrY 1054114 1104113 16 N 50000 contig no
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chrY 1104114 1147822 17 F BX649635.3 1 43709 +
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chrY 1147823 1184234 18 F BX901949.9 1685 38096 +
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chrY 1184235 1274234 19 N 90000 contig no
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chrY 1274235 1307891 20 F BX908382.8 1 33657 +
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chrY 1307892 1390773 21 F BX649553.6 2001 84882 +
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chrY 1390774 1425289 22 F BX901885.7 1 34516 +
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chrY 1425290 1458955 23 F BX119906.16 2001 35666 +
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chrY 1458956 1618348 24 F AL683870.15 1001 160393 +
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chrY 1618349 1661433 25 F AL691415.17 1 43085 +
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chrY 1661434 1849259 26 F AL683807.22 1 187826 +
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chrY 1849260 1966556 27 F AL672040.10 1 117297 +
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chrY 1966557 2028238 28 F CR381640.8 2001 63682 +
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chrY 2028239 2128238 29 N 100000 contig no
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chrY 2128239 2165561 30 F CR856018.10 1 37323 +
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chrY 2165562 2202890 31 F CR381696.5 2000 39328 +
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chrY 2202891 2280454 32 F BX649443.16 2001 79564 +
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chrY 2280455 2333896 33 F BX119919.5 1 53442 -
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chrY 2333897 2514591 34 F AC079176.15 1 180695 -
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chrY 2514592 2593088 35 F AC097314.27 1 78497 -
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chrY 2593089 2709520 36 F AC006209.25 23323 139754 -
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chrY 2709521 2838553 37 F AC006040.3 57272 186304 +
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chrY 2838554 2845472 38 F AC074181.1 1 6919 +
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chrY 2845473 2999955 39 F AC006157.2 1 154483 +
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chrY 2999956 3170037 40 F AC006032.2 1 170082 +
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chrY 3170038 3247254 41 F AC006152.4 1 77217 +
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chrY 3247255 3316539 42 F AC011305.2 1 69285 +
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chrY 3316540 3471638 43 F AC009479.4 1 155099 +
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chrY 3471639 3567129 44 F AC019058.4 1 95491 +
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chrY 3567130 3650550 45 F AC024038.6 1 83421 +
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chrY 3650551 3827222 46 F AC012078.3 1 176672 +
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chrY 3827223 3945458 47 F AC010094.5 1 118236 +
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chrY 3945459 4015462 48 F AC010737.4 1 70004 +
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chrY 4015463 4164401 49 F AC010084.3 1 148939 +
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chrY 4164402 4316800 50 F AC010905.3 1 152399 +
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chrY 4316801 4335619 51 F AC010106.2 1 18819 +
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chrY 4335620 4367320 52 F AC024703.5 1 31701 +
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chrY 4367321 4576407 53 F AC012077.4 1 209087 +
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chrY 4576408 4712669 54 F AC010142.4 1 136262 +
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chrY 4712670 4829264 55 F AC019060.5 1 116595 +
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chrY 4829265 4917080 56 F AC023423.5 1 87816 +
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chrY 4917081 5077603 57 F AC010722.2 1 160523 +
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chrY 5077604 5237705 58 F AC010685.3 1 160102 +
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chrY 5237706 5281650 59 F AC010129.3 1 43945 +
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chrY 5281651 5445957 60 F AC012067.2 1 164307 +
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chrY 5445958 5520761 61 F AC012667.2 1 74804 +
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chrY 5520762 5697342 62 F AC010081.4 1 176581 +
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chrY 5697343 5811187 63 F AC010874.3 1 113845 +
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chrY 5811188 5947272 64 F AC010977.4 1 136085 +
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chrY 5947273 6015798 65 F AC016681.2 1 68526 +
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chrY 6015799 6163940 66 F AC010140.3 1 148142 +
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chrY 6163941 6386252 67 F AC006335.2 1 222312 +
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chrY 6386253 6441403 68 F AC010154.3 1 55151 +
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chrY 6441404 6607550 69 F AC010144.4 1 166147 +
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chrY 6607551 6623520 70 F AC010728.4 1 15970 +
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chrY 6623521 6823534 71 F AC013412.3 1 200014 +
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chrY 6823535 6877729 72 F AC011297.3 1 54195 +
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chrY 6877730 7044045 73 F AC012068.5 1 166316 +
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chrY 7044046 7154095 74 F AC010104.3 1 110050 +
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chrY 7154096 7233943 75 F AC010143.3 1 79848 +
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chrY 7233944 7405192 76 F AC007284.4 1 171249 +
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chrY 7405193 7521780 77 F AC007247.5 1 116588 +
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chrY 7521781 7638889 78 F AC007274.3 1 117109 +
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chrY 7638890 7808593 79 F AC007275.4 1 169704 +
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chrY 7808594 7883829 80 F AC010678.4 1 75236 +
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chrY 7883830 7997798 81 F AC010902.4 1 113969 +
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chrY 7997799 8184715 82 F AC016749.4 1 186917 +
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chrY 8184716 8278929 83 F AC051663.9 1 94214 +
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chrY 8278930 8370383 84 F AC025731.12 1 91454 +
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chrY 8370384 8544585 85 F AC016991.5 1 174202 +
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chrY 8544586 8634069 86 F AC064829.6 1 89484 +
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chrY 8634070 8774803 87 F AC009491.3 1 140734 +
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chrY 8774804 8962150 88 F AC007967.3 1 187347 +
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chrY 8962151 8972934 89 F AC068719.3 1 10784 +
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chrY 8972935 8974955 90 F AC079126.3 1 2021 +
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chrY 8974956 9024955 91 N 50000 clone no
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chrY 9024956 9030327 92 F AC079125.4 1 5372 +
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chrY 9030328 9178185 93 F AC009952.4 1 147858 +
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chrY 9178186 9190963 94 F AC025732.9 1 12778 +
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chrY 9190964 9301322 95 F AC006158.6 1 110359 +
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chrY 9301323 9901322 96 N 600000 clone no
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chrY 9901323 10013703 97 F AC006156.5 1 112381 +
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chrY 10013704 10088698 98 F AC025819.7 1 74995 +
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chrY 10088699 10250877 99 F AC017019.3 1 162179 +
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chrY 10250878 10283186 100 F AC010891.2 1 32309 +
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chrY 10283187 10456943 101 F AC006986.3 1 173757 +
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chrY 10456944 10622784 102 F AC006987.2 1 165841 +
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chrY 10622785 10714553 103 F AC010970.3 1 91769 +
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chrY 10714554 11214553 104 N 500000 clone no
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chrY 11214554 11253954 105 F AC069323.5 1 39401 +
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chrY 11253955 11653954 106 N 400000 centromere no
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chrY 11653955 11738549 107 F AC140113.3 71061 155655 -
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chrY 11738550 11861114 108 F AC134878.3 33249 155813 -
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chrY 11861115 12003063 109 F AC134882.2 10706 152654 -
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chrY 12003064 12208578 110 F AC134879.3 1 205515 -
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chrY 12208579 12308578 111 N 100000 centromere no
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chrY 12308579 12468100 112 F AC011293.5 1 159522 +
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chrY 12468101 12581699 113 F AC012502.3 1 113599 +
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chrY 12581700 12759636 114 F AC011302.3 1 177937 +
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chrY 12759637 12838587 115 F AC013735.5 1 78951 +
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chrY 12838588 12911566 116 F AC004772.2 40021 112999 +
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chrY 12911567 12936024 117 F AC005942.2 1 24458 -
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chrY 12936025 13059669 118 F AC002992.1 2001 125645 +
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chrY 13059670 13234892 119 F AC004617.2 1 175223 +
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chrY 13234893 13319390 120 F AC004810.1 1 84498 -
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chrY 13319391 13515290 121 F AC002531.1 2001 197900 +
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chrY 13515291 13619376 122 F AC004474.1 44195 148280 +
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chrY 13619377 13664255 123 F AC006565.4 1 44879 -
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chrY 13664256 13879980 124 F AC005820.1 1 215725 -
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chrY 13879981 13952171 125 F AC010877.3 64839 137029 +
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chrY 13952172 14123978 126 F AC006376.2 1 171807 +
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chrY 14123979 14159738 127 F AC007004.3 1 35760 +
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chrY 14159739 14264748 128 F AC006383.2 1 105010 +
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chrY 14264749 14466902 129 F AC006371.2 1 202154 +
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chrY 14466903 14639848 130 F AC006370.2 1 172946 +
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chrY 14639849 14742756 131 F AC018677.3 1 102908 +
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chrY 14742757 14779500 132 F AC010720.4 1 36744 +
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chrY 14779501 14953720 133 F AC010723.3 1 174220 +
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chrY 14953721 14981864 134 F AC019191.4 1 28144 +
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chrY 14981865 15158188 135 F AC010726.4 1 176324 +
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chrY 15158189 15267382 136 F AC010979.3 1 109194 +
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chrY 15267383 15447103 137 F AC010879.2 1 179721 +
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chrY 15447104 15512578 138 F AC011903.4 1 65475 +
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chrY 15512579 15557501 139 F AC017032.3 1 44923 +
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chrY 15557502 15714967 140 F AC006989.3 1 157466 +
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chrY 15714968 15795304 141 F AC011289.4 1 80337 +
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chrY 15795305 15909741 142 F AC010972.3 1 114437 +
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chrY 15909742 15967360 143 F AC007007.3 1 57619 +
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chrY 15967361 16111420 144 F AC006998.3 1 144060 +
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chrY 16111421 16274030 145 F AC006382.3 1 162610 +
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chrY 16274031 16413824 146 F AC006462.3 1 139794 +
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chrY 16413825 16509580 147 F AC006336.4 1 95756 +
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chrY 16509581 16528817 148 F AC016671.3 1 19237 +
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chrY 16528818 16695020 149 F AC017020.4 1 166203 +
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chrY 16695021 16899873 150 F AC011749.2 1 204853 +
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chrY 16899874 16926987 151 F AC053516.10 1 27114 +
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chrY 16926988 17103738 152 F AC010135.3 1 176751 +
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chrY 17103739 17166324 153 F AC010128.3 1 62586 +
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chrY 17166325 17345839 154 F AC011751.2 1 179515 +
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chrY 17345840 17488621 155 F AC016678.4 1 142782 +
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chrY 17488622 17510633 156 F AC015979.4 1 22012 +
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chrY 17510634 17659631 157 F AC007034.4 1 148998 +
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chrY 17659632 17766833 158 F AC007043.3 1 107202 +
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chrY 17766834 17879511 159 F AC006999.2 1 112678 +
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chrY 17879512 17886218 160 F AC007042.3 1 6707 +
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chrY 17886219 17923463 161 F AC091329.3 1 37245 +
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chrY 17923464 18051552 162 F AC007972.4 1 128089 +
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chrY 18051553 18230132 163 F AC015978.4 1 178580 +
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chrY 18230133 18244934 164 F AC068704.4 1 14802 +
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chrY 18244935 18443908 165 F AC007742.4 1 198974 +
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chrY 18443909 18474219 166 F AC095381.1 1 30311 +
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chrY 18474220 18653273 167 F AC009976.4 1 179054 +
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chrY 18653274 18698502 168 F AC095380.1 1 45229 +
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chrY 18698503 18861991 169 F AC024183.4 1 163489 +
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chrY 18861992 19023659 170 F AC007241.3 1 161668 +
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chrY 19023660 19090333 171 F AC069130.6 1 66674 +
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chrY 19090334 19096847 172 F AC073962.5 1 6514 +
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chrY 19096848 19134213 173 F AC068541.7 1 37366 +
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chrY 19134214 19290370 174 F AC022486.4 1 156157 +
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chrY 19290371 19464252 175 F AC007379.2 1 173882 +
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chrY 19464253 19623962 176 F AC009235.4 1 159710 +
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chrY 19623963 19808739 177 F AC007244.2 1 184777 +
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chrY 19808740 19871998 178 F AC021210.4 1 63259 +
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chrY 19871999 20023872 179 F AC010133.4 1 151874 +
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chrY 20023873 20066067 180 F AC012062.4 1 42195 +
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chrY 20066068 20189568 181 F AC010137.3 1 123501 +
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chrY 20189569 20221039 182 F AC009977.4 1 31471 +
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chrY 20221040 20400963 183 F AC010889.3 1 179924 +
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chrY 20400964 20472584 184 F AC010151.3 1 71621 +
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chrY 20472585 20667823 185 F AC009233.3 1 195239 +
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chrY 20667824 20778857 186 F AC079157.3 1 111034 +
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chrY 20778858 20829067 187 F AC079261.2 1 50210 +
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chrY 20829068 20846452 188 F AC079156.4 1 17385 +
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chrY 20846453 20889975 189 F AC024250.6 1 43523 +
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chrY 20889976 20991065 190 F AC009240.6 1 101090 +
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chrY 20991066 21140390 191 F AC011745.4 1 149325 +
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chrY 21140391 21249363 192 F AC007678.3 1 108973 +
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chrY 21249364 21437477 193 F AC009494.2 1 188114 +
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chrY 21437478 21456819 194 F AC026061.8 1 19342 +
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chrY 21456820 21557572 195 F AC009489.3 1 100753 +
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chrY 21557573 21722251 196 F AC007876.2 1 164679 +
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chrY 21722252 21858422 197 F AC009239.3 1 136171 +
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chrY 21858423 22029157 198 F AC010086.4 1 170735 +
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chrY 22029158 22150215 199 F AC010141.2 1 121058 +
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chrY 22150216 22310816 200 F AC021107.3 1 160601 +
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chrY 22310817 22360816 201 N 50000 clone no
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chrY 22360817 22384194 202 F AC078938.3 1 23378 +
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chrY 22384195 22403616 203 F AC024236.5 1 19422 +
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chrY 22403617 22587631 204 F AC007322.4 1 184015 +
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chrY 22587632 22688058 205 F AC007359.3 1 100427 +
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chrY 22688059 22757212 206 F AC023342.3 1 69154 +
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chrY 22757213 22817822 207 F AC025227.6 1 60610 +
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chrY 22817823 23005516 208 F AC007320.3 1 187694 +
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chrY 23005517 23210553 209 F AC008175.2 1 205037 +
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chrY 23210554 23230057 210 F AC016694.2 1 19504 +
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chrY 23230058 23386813 211 F AC010080.2 1 156756 +
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chrY 23386814 23417437 212 F AC016911.6 1 30624 +
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chrY 23417438 23583695 213 F AC006366.4 201 166458 -
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chrY 23583696 23691182 214 F AC010088.4 1 107487 +
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chrY 23691183 23794414 215 F AC053490.2 1 103232 +
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chrY 23794415 23811321 216 F AC007039.6 1 16907 +
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chrY 23811322 23991466 217 F AC006983.4 1 180145 +
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chrY 23991467 24140496 218 F AC009947.2 1 149030 +
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chrY 24140497 24157833 219 F AC016707.2 1 17337 +
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chrY 24157834 24324069 220 F AC016752.2 1 166236 +
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chrY 24324070 24353833 221 F AC025246.6 1 29764 +
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chrY 24353834 24474584 222 F AC073649.3 1 120751 +
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chrY 24474585 24538834 223 F AC073893.4 1 64250 +
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chrY 24538835 24614390 224 F AC068601.8 1 75556 +
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chrY 24614391 24751872 225 F AC023274.2 1 137482 +
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chrY 24751873 24941229 226 F AC012005.4 1 189357 +
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chrY 24941230 24948693 227 F AC013465.4 1 7464 +
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chrY 24948694 25102779 228 F AC016698.3 1 154086 +
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chrY 25102780 25206726 229 F AC010153.3 1 103947 +
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chrY 25206727 25291998 230 F AC025735.4 1 85272 +
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chrY 25291999 25395154 231 F AC010089.4 1 103156 +
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chrY 25395155 25397101 232 F AC006982.3 1 1947 +
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chrY 25397102 25572891 233 F AC006338.6 1 175790 +
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chrY 25572892 25724743 234 F AC016728.4 1 151852 +
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chrY 25724744 25888772 235 F AC006386.4 1 164029 +
|
||
|
|
chrY 25888773 26066341 236 F AC006328.5 1 177569 +
|
||
|
|
chrY 26066342 26203218 237 F AC007562.4 1 136877 +
|
||
|
|
chrY 26203219 26348595 238 F AC010682.3 1 145377 +
|
||
|
|
chrY 26348596 26443316 239 F AC017005.7 1 94721 +
|
||
|
|
chrY 26443317 26625199 240 F AC007965.3 1 181883 +
|
||
|
|
chrY 26625200 26798241 241 F AC006991.3 1 173042 +
|
||
|
|
chrY 26798242 26906387 242 F AC024067.4 1 108146 +
|
||
|
|
chrY 26906388 27086206 243 F AC013734.4 1 179819 +
|
||
|
|
chrY 27086207 27194539 244 F AC019099.6 1 108333 +
|
||
|
|
chrY 27194540 27228749 245 F AC073880.5 1 34210 +
|
||
|
|
chrY 27228750 57228749 246 N 30000000 heterochromatin no
|
||
|
|
chrY 57228750 57327044 247 F AC068123.5 1 98295 +
|
||
|
|
chrY 57327045 57377044 248 N 50000 clone no
|
||
|
|
chrY 57377045 57443437 249 F AC025226.4 101674 168066 -
|
||
|
|
chrY 57443438 57614293 250 F AJ271735.1 69145 240000 +
|
||
|
|
chrY 57614294 57772954 251 F AJ271736.1 1 158661 +
|