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ACF ACF
ACF.gls ACF.gls
ACF.lme ACF.lme
Alfalfa Alfalfa
allCoef allCoef
anova.gls anova.gls
anova.lme anova.lme
as.data.frame.groupedData groupedData
as.matrix.corStruct as.matrix.corStruct
as.matrix.pdMat as.matrix.pdMat
as.matrix.reStruct as.matrix.reStruct
asOneFormula asOneFormula
Assay Assay
asTable asTable
asTable.groupedData asTable
augPred augPred
augPred.gls augPred
augPred.lme augPred
augPred.lmList augPred
balancedGrouped balancedGrouped
bdf bdf
BodyWeight BodyWeight
Cefamandole Cefamandole
coef.corAR1 coef.corStruct
coef.corARMA corARMA
coef.corARMAd coef.corStruct
coef.corCAR1 coef.corStruct
coef.corCompSymm coef.corStruct
coef.corHF coef.corStruct
coef.corLin coef.corStruct
coef.corNatural coef.corStruct
coef.corSpatial coef.corStruct
coef.corSpher coef.corStruct
coef.corStruct coef.corStruct
coef.corSymm coef.corStruct
coef.gnls coef.gnls
coef.lme coef.lme
coef.lmList coef.lmList
coef.modelStruct coef.modelStruct
coef.pdBlocked coef.pdMat
coef.pdCompSymm coef.pdMat
coef.pdDiag coef.pdMat
coef.pdIdent coef.pdMat
coef.pdMat coef.pdMat
coef.pdNatural coef.pdMat
coef.pdSymm coef.pdMat
coef.reStruct coef.reStruct
coef.summary.nlsList coef.corStruct
coef.varComb coef.varFunc
coef.varConstPower coef.varFunc
coef.varConstProp coef.varFunc
coef.varExp coef.varFunc
coef.varFixed coef.varFunc
coef.varFunc coef.varFunc
coef.varIdent coef.varFunc
coef.varPower coef.varFunc
coef<- Coef
coef<-.corAR1 coef.corStruct
coef<-.corARMA coef.corStruct
coef<-.corCAR1 coef.corStruct
coef<-.corCompSymm coef.corStruct
coef<-.corHF coef.corStruct
coef<-.corLin coef.corStruct
coef<-.corNatural coef.corStruct
coef<-.corSpatial coef.corStruct
coef<-.corSpher coef.corStruct
coef<-.corStruct coef.corStruct
coef<-.corSymm coef.corStruct
coef<-.modelStruct coef.modelStruct
coef<-.pdBlocked coef.pdMat
coef<-.pdMat coef.pdMat
coef<-.reStruct coef.reStruct
coef<-.varComb coef.varFunc
coef<-.varConstPower coef.varFunc
coef<-.varConstProp coef.varFunc
coef<-.varExp coef.varFunc
coef<-.varFixed coef.varFunc
coef<-.varIdent coef.varFunc
coef<-.varPower coef.varFunc
coefficients<- Coef
collapse collapse
collapse.groupedData collapse.groupedData
compareFits compareFits
comparePred comparePred
comparePred.gls comparePred
comparePred.lme comparePred
comparePred.lmList comparePred
corAR1 corAR1
corARMA corARMA
corCAR1 corCAR1
corClasses corClasses
corCompSymm corCompSymm
corExp corExp
corFactor corFactor
corFactor.corAR1 corFactor.corStruct
corFactor.corARMA corFactor.corStruct
corFactor.corCAR1 corFactor.corStruct
corFactor.corCompSymm corFactor.corStruct
corFactor.corNatural corFactor.corStruct
corFactor.corSpatial corFactor.corStruct
corFactor.corStruct corFactor.corStruct
corFactor.corSymm corFactor.corStruct
corGaus corGaus
corIdent nlme-deprecated
corLin corLin
corMatrix corMatrix
corMatrix.corAR1 corMatrix.corStruct
corMatrix.corARMA corMatrix.corStruct
corMatrix.corCAR1 corMatrix.corStruct
corMatrix.corCompSymm corMatrix.corStruct
corMatrix.corNatural corMatrix.corStruct
corMatrix.corSpatial corMatrix.corStruct
corMatrix.corStruct corMatrix.corStruct
corMatrix.corSymm corMatrix.corStruct
corMatrix.pdBlocked corMatrix.pdMat
corMatrix.pdCompSymm corMatrix.pdMat
corMatrix.pdDiag corMatrix.pdMat
corMatrix.pdIdent corMatrix.pdMat
corMatrix.pdMat corMatrix.pdMat
corMatrix.pdSymm corMatrix.pdMat
corMatrix.reStruct corMatrix.reStruct
corNatural corNatural
corRatio corRatio
corSpatial corSpatial
corSpher corSpher
corStruct corClasses
corSymm corSymm
covariate<- Covariate
covariate<-.varFunc Covariate.varFunc
Dialyzer Dialyzer
Dim Dim
Dim.corSpatial Dim.corSpatial
Dim.corStruct Dim.corStruct
Dim.default Dim
Dim.pdCompSymm Dim.pdMat
Dim.pdDiag Dim.pdMat
Dim.pdIdent Dim.pdMat
Dim.pdMat Dim.pdMat
Dim.pdNatural Dim.pdMat
Dim.pdSymm Dim.pdMat
Earthquake Earthquake
ergoStool ergoStool
Fatigue Fatigue
fdHess fdHess
fitted.glsStruct fitted.glsStruct
fitted.gnlsStruct fitted.gnlsStruct
fitted.lme fitted.lme
fitted.lmeStruct fitted.lmeStruct
fitted.lmList fitted.lmList
fitted.nlmeStruct fitted.nlmeStruct
fixed.effects fixed.effects
fixed.effects.lmList fixef.lmList
fixef fixed.effects
fixef.lmList fixef.lmList
formula.pdBlocked formula.pdBlocked
formula.pdMat formula.pdMat
formula.reStruct formula.reStruct
gapply gapply
Gasoline Gasoline
getCovariate getCovariate
getCovariate.corSpatial getCovariate.corStruct
getCovariate.corStruct getCovariate.corStruct
getCovariate.data.frame getCovariate.data.frame
getCovariate.varFunc getCovariate.varFunc
getCovariateFormula getCovariateFormula
getData getData
getData.gls getData.gls
getData.gnls getData.gls
getData.lme getData.lme
getData.lmList getData.lmList
getData.nlme getData.lme
getData.nls getData.lme
getGroups getGroups
getGroups.corStruct getGroups.corStruct
getGroups.data.frame getGroups.data.frame
getGroups.gls getGroups.gls
getGroups.lme getGroups.lme
getGroups.lmList getGroups.lmList
getGroups.varFunc getGroups.varFunc
getGroupsFormula getGroupsFormula
getGroupsFormula.default getGroupsFormula
getGroupsFormula.gls getGroupsFormula
getGroupsFormula.lme getGroupsFormula
getGroupsFormula.lmList getGroupsFormula
getGroupsFormula.reStruct getGroupsFormula
getResponse getResponse
getResponse.data.frame getResponse
getResponseFormula getResponseFormula
getVarCov getVarCov
getVarCov.gls getVarCov
getVarCov.lme getVarCov
gls gls
glsApVar gls-internal
glsControl glsControl
glsEstimate gls-internal
glsObject glsObject
glsStruct glsStruct
Glucose Glucose
Glucose2 Glucose2
gnls gnls
gnlsControl gnlsControl
gnlsObject gnlsObject
gnlsStruct gnlsStruct
groupedData groupedData
gsummary gsummary
Gun Gun
IGF IGF
Initialize Initialize
Initialize.corAR1 Initialize.corStruct
Initialize.corARMA Initialize.corStruct
Initialize.corCAR1 Initialize.corStruct
Initialize.corCompSymm Initialize.corStruct
Initialize.corHF Initialize.corStruct
Initialize.corLin Initialize.corStruct
Initialize.corNatural Initialize.corStruct
Initialize.corSpatial Initialize.corStruct
Initialize.corSpher Initialize.corStruct
Initialize.corStruct Initialize.corStruct
Initialize.corSymm Initialize.corStruct
Initialize.glsStruct Initialize.glsStruct
Initialize.gnlsStruct gnlsStruct
Initialize.lmeStruct Initialize.lmeStruct
Initialize.reStruct Initialize.reStruct
Initialize.varComb Initialize.varFunc
Initialize.varConstPower Initialize.varFunc
Initialize.varConstProp Initialize.varFunc
Initialize.varExp Initialize.varFunc
Initialize.varFixed Initialize.varFunc
Initialize.varFunc Initialize.varFunc
Initialize.varIdent Initialize.varFunc
Initialize.varPower Initialize.varFunc
intervals intervals
intervals.gls intervals.gls
intervals.lme intervals.lme
intervals.lmList intervals.lmList
isBalanced isBalanced
isBalanced.groupedData isBalanced
isInitialized isInitialized
isInitialized.pdBlocked isInitialized
isInitialized.pdMat isInitialized
LDEsysMat LDEsysMat
lme lme
lme.formula lme
lme.groupedData lme.groupedData
lme.lmList lme.lmList
lmeControl lmeControl
lmeObject lmeObject
lmeStruct lmeStruct
lmList lmList
lmList.formula lmList
lmList.groupedData lmList.groupedData
logDet logDet
logDet.corStruct logDet.corStruct
logDet.pdBlocked logDet.pdMat
logDet.pdCompSymm logDet.pdMat
logDet.pdDiag logDet.pdMat
logDet.pdIdent logDet.pdMat
logDet.pdMat logDet.pdMat
logDet.pdNatural logDet.pdMat
logDet.pdSymm logDet.pdMat
logDet.reStruct logDet.reStruct
logLik.corStruct logLik.corStruct
logLik.gls logLik.lme
logLik.glsStruct logLik.glsStruct
logLik.gnls logLik.gnls
logLik.gnlsStruct logLik.gnlsStruct
logLik.lme logLik.lme
logLik.lmeStruct logLik.lmeStruct
logLik.lmeStructInt logLik.lmeStruct
logLik.lmList logLik.lmList
logLik.reStruct logLik.reStruct
logLik.varComb logLik.varFunc
logLik.varFunc logLik.varFunc
Machines Machines
MathAchieve MathAchieve
MathAchSchool MathAchSchool
matrix<- Matrix
matrix<-.pdBlocked Matrix.pdMat
matrix<-.pdMat Matrix.pdMat
matrix<-.reStruct Matrix.reStruct
Meat Meat
Milk Milk
model.matrix.reStruct model.matrix.reStruct
Muscle Muscle
Names Names
Names.formula Names.formula
Names.listForm Names.formula
Names.pdBlocked Names.pdBlocked
Names.pdMat Names.pdMat
Names.reStruct Names.reStruct
Names<- Names
Names<-.pdBlocked Names.pdBlocked
Names<-.pdMat Names.pdMat
Names<-.reStruct Names.reStruct
needUpdate needUpdate
needUpdate.corStruct needUpdate.modelStruct
needUpdate.default needUpdate
needUpdate.modelStruct needUpdate.modelStruct
needUpdate.reStruct needUpdate.modelStruct
needUpdate.varComb needUpdate
needUpdate.varIdent needUpdate
nfGroupedData nlme-deprecated
Nitrendipene Nitrendipene
nlme nlme
nlme-deprecated nlme-deprecated
nlme.formula nlme
nlme.nlsList nlme.nlsList
nlmeControl nlmeControl
nlmeObject nlmeObject
nlmeStruct nlmeStruct
nlsList nlsList
nlsList.formula nlsList
nlsList.selfStart nlsList.selfStart
nmGroupedData nlme-deprecated
Oats Oats
Orthodont Orthodont
Ovary Ovary
Oxboys Oxboys
Oxide Oxide
pairs.compareFits pairs.compareFits
pairs.lme pairs.lme
pairs.lmList pairs.lmList
PBG PBG
pdBlocked pdBlocked
pdClasses pdClasses
pdCompSymm pdCompSymm
pdConstruct pdConstruct
pdConstruct.pdBlocked pdConstruct.pdBlocked
pdConstruct.pdCompSymm pdConstruct
pdConstruct.pdDiag pdConstruct
pdConstruct.pdIdent pdConstruct
pdConstruct.pdLogChol pdConstruct
pdConstruct.pdMat pdConstruct
pdConstruct.pdNatural pdConstruct
pdConstruct.pdSymm pdConstruct
pdDiag pdDiag
pdFactor pdFactor
pdFactor.pdBlocked pdFactor
pdFactor.pdCompSymm pdFactor
pdFactor.pdDiag pdFactor
pdFactor.pdIdent pdFactor
pdFactor.pdLogChol pdFactor
pdFactor.pdMat pdFactor
pdFactor.pdNatural pdFactor
pdFactor.pdSymm pdFactor
pdFactor.reStruct pdFactor.reStruct
pdIdent pdIdent
pdLogChol pdLogChol
pdMat pdMat
pdMatrix pdMatrix
pdMatrix.pdBlocked pdMatrix
pdMatrix.pdCompSymm pdMatrix
pdMatrix.pdDiag pdMatrix
pdMatrix.pdIdent pdMatrix
pdMatrix.pdMat pdMatrix
pdMatrix.pdNatural pdMatrix
pdMatrix.pdSymm pdMatrix
pdMatrix.reStruct pdMatrix.reStruct
pdNatural pdNatural
pdSymm pdSymm
Phenobarb Phenobarb
phenoModel phenoModel
Pixel Pixel
plot.ACF plot.ACF
plot.augPred plot.augPred
plot.compareFits plot.compareFits
plot.gls plot.gls
plot.intervals.lmList plot.intervals.lmList
plot.lme plot.lme
plot.lmList plot.lmList
plot.nffGroupedData plot.nffGroupedData
plot.nfnGroupedData plot.nfnGroupedData
plot.nls plot.lme
plot.nmGroupedData plot.nmGroupedData
plot.pdMat pdMat
plot.ranef.lme plot.ranef.lme
plot.ranef.lmList plot.ranef.lmList
plot.simulate.lme simulate.lme
plot.Variogram plot.Variogram
pooledSD pooledSD
predict.gls predict.gls
predict.gnls predict.gnls
predict.lme predict.lme
predict.lmList predict.lmList
predict.nlme predict.nlme
print.anova.lme anova.lme
print.compareFits compareFits
print.corNatural corNatural
print.intervals.gls intervals.gls
print.intervals.lme intervals.lme
print.intervals.lmList intervals.lmList
print.lmList lmList
print.ranef random.effects
print.ranef.lme ranef.lme
print.reStruct reStruct
print.simulate.lme simulate.lme
print.summary.lme summary.lme
print.summary.pdMat print.summary.pdMat
print.varComb print.varFunc
print.VarCorr.lme VarCorr
print.VarCov getVarCov
print.varFunc print.varFunc
qqnorm.gls qqnorm.gls
qqnorm.lm qqnorm.lme
qqnorm.lme qqnorm.lme
qqnorm.lmList qqnorm.lme
qqnorm.nls qqnorm.lme
Quinidine Quinidine
quinModel quinModel
Rail Rail
random.effects random.effects
random.effects.lme ranef.lme
random.effects.lmList ranef.lmList
ranef random.effects
ranef.lme ranef.lme
ranef.lmList ranef.lmList
RatPupWeight RatPupWeight
recalc recalc
recalc.corAR1 recalc.corStruct
recalc.corARMA recalc.corStruct
recalc.corCAR1 recalc.corStruct
recalc.corCompSymm recalc.corStruct
recalc.corHF recalc.corStruct
recalc.corNatural recalc.corStruct
recalc.corSpatial recalc.corStruct
recalc.corStruct recalc.corStruct
recalc.corSymm recalc.corStruct
recalc.modelStruct recalc.modelStruct
recalc.reStruct recalc.reStruct
recalc.varFunc recalc.varFunc
recalc.varIdent recalc.varFunc
Relaxin Relaxin
Remifentanil Remifentanil
residuals.gls residuals.gls
residuals.glsStruct residuals.glsStruct
residuals.gnls residuals.gls
residuals.gnlsStruct residuals.gnlsStruct
residuals.lme residuals.lme
residuals.lmeStruct residuals.lmeStruct
residuals.lmList residuals.lmList
residuals.nlmeStruct residuals.nlmeStruct
reStruct reStruct
simulate.lme simulate.lme
solve.pdBlocked solve.pdMat
solve.pdDiag solve.pdMat
solve.pdIdent solve.pdMat
solve.pdLogChol solve.pdMat
solve.pdMat solve.pdMat
solve.pdNatural solve.pdMat
solve.pdSymm solve.pdMat
solve.reStruct solve.reStruct
Soybean Soybean
splitFormula splitFormula
Spruce Spruce
summary.corAR1 summary.corStruct
summary.corARMA summary.corStruct
summary.corCAR1 summary.corStruct
summary.corCompSymm summary.corStruct
summary.corExp summary.corStruct
summary.corGaus summary.corStruct
summary.corLin summary.corStruct
summary.corNatural summary.corStruct
summary.corRatio summary.corStruct
summary.corSpher summary.corStruct
summary.corStruct summary.corStruct
summary.corSymm summary.corStruct
summary.gls summary.gls
summary.lme summary.lme
summary.lmList summary.lmList
summary.modelStruct summary.modelStruct
summary.nlsList summary.nlsList
summary.pdBlocked summary.pdMat
summary.pdCompSymm summary.pdMat
summary.pdDiag summary.pdMat
summary.pdIdent summary.pdMat
summary.pdLogChol summary.pdMat
summary.pdMat summary.pdMat
summary.pdNatural summary.pdMat
summary.pdSymm summary.pdMat
summary.reStruct summary.modelStruct
summary.varComb summary.varFunc
summary.varConstPower summary.varFunc
summary.varConstProp summary.varFunc
summary.varExp summary.varFunc
summary.varFixed summary.varFunc
summary.varFunc summary.varFunc
summary.varIdent summary.varFunc
summary.varPower summary.varFunc
Tetracycline1 Tetracycline1
Tetracycline2 Tetracycline2
update.corStruct update.modelStruct
update.gls gls
update.groupedData groupedData
update.lme lme
update.lmList lmList
update.modelStruct update.modelStruct
update.nlsList nlsList
update.reStruct update.modelStruct
update.varComb update.varFunc
update.varConstPower update.varFunc
update.varConstProp update.varFunc
update.varExp update.varFunc
update.varExpon update.varFunc
update.varFunc update.varFunc
update.varPower update.varFunc
varClasses varClasses
varComb varComb
varConstPower varConstPower
varConstProp varConstProp
VarCorr VarCorr
VarCorr.lme VarCorr
VarCorr.pdBlocked VarCorr
VarCorr.pdMat VarCorr
varExp varExp
varFixed varFixed
varFunc varFunc
varIdent varIdent
Variogram Variogram
Variogram.corExp Variogram.corExp
Variogram.corGaus Variogram.corGaus
Variogram.corLin Variogram.corLin
Variogram.corRatio Variogram.corRatio
Variogram.corSpatial Variogram.corSpatial
Variogram.corSpher Variogram.corSpher
Variogram.default Variogram.default
Variogram.gls Variogram.gls
Variogram.lme Variogram.lme
varPower varPower
varWeights varWeights
varWeights.glsStruct varWeights.glsStruct
varWeights.lmeStruct varWeights.lmeStruct
varWeights.varComb varWeights
varWeights.varFunc varWeights
Wafer Wafer
Wheat Wheat
Wheat2 Wheat2
[.groupedData groupedData
[.pdBlocked Extract.pdMat
[.pdMat Extract.pdMat
[.reStruct reStruct
[<-.pdMat Extract.pdMat