542 lines
15 KiB
Plaintext
542 lines
15 KiB
Plaintext
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ACF ACF
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ACF.gls ACF.gls
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ACF.lme ACF.lme
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Alfalfa Alfalfa
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allCoef allCoef
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anova.gls anova.gls
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anova.lme anova.lme
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as.data.frame.groupedData groupedData
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as.matrix.corStruct as.matrix.corStruct
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as.matrix.pdMat as.matrix.pdMat
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as.matrix.reStruct as.matrix.reStruct
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asOneFormula asOneFormula
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Assay Assay
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asTable asTable
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asTable.groupedData asTable
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augPred augPred
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augPred.gls augPred
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augPred.lme augPred
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augPred.lmList augPred
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balancedGrouped balancedGrouped
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bdf bdf
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BodyWeight BodyWeight
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Cefamandole Cefamandole
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coef.corAR1 coef.corStruct
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coef.corARMA corARMA
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coef.corARMAd coef.corStruct
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coef.corCAR1 coef.corStruct
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coef.corCompSymm coef.corStruct
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coef.corHF coef.corStruct
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coef.corLin coef.corStruct
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coef.corNatural coef.corStruct
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coef.corSpatial coef.corStruct
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coef.corSpher coef.corStruct
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coef.corStruct coef.corStruct
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coef.corSymm coef.corStruct
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coef.gnls coef.gnls
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coef.lme coef.lme
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coef.lmList coef.lmList
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coef.modelStruct coef.modelStruct
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coef.pdBlocked coef.pdMat
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coef.pdCompSymm coef.pdMat
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coef.pdDiag coef.pdMat
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coef.pdIdent coef.pdMat
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coef.pdMat coef.pdMat
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coef.pdNatural coef.pdMat
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coef.pdSymm coef.pdMat
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coef.reStruct coef.reStruct
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coef.summary.nlsList coef.corStruct
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coef.varComb coef.varFunc
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coef.varConstPower coef.varFunc
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coef.varConstProp coef.varFunc
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coef.varExp coef.varFunc
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coef.varFixed coef.varFunc
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coef.varFunc coef.varFunc
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coef.varIdent coef.varFunc
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coef.varPower coef.varFunc
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coef<- Coef
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coef<-.corAR1 coef.corStruct
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coef<-.corARMA coef.corStruct
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coef<-.corCAR1 coef.corStruct
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coef<-.corCompSymm coef.corStruct
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coef<-.corHF coef.corStruct
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coef<-.corLin coef.corStruct
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coef<-.corNatural coef.corStruct
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coef<-.corSpatial coef.corStruct
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coef<-.corSpher coef.corStruct
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coef<-.corStruct coef.corStruct
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coef<-.corSymm coef.corStruct
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coef<-.modelStruct coef.modelStruct
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coef<-.pdBlocked coef.pdMat
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coef<-.pdMat coef.pdMat
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coef<-.reStruct coef.reStruct
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coef<-.varComb coef.varFunc
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coef<-.varConstPower coef.varFunc
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coef<-.varConstProp coef.varFunc
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coef<-.varExp coef.varFunc
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coef<-.varFixed coef.varFunc
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coef<-.varIdent coef.varFunc
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coef<-.varPower coef.varFunc
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coefficients<- Coef
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collapse collapse
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collapse.groupedData collapse.groupedData
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compareFits compareFits
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comparePred comparePred
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comparePred.gls comparePred
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comparePred.lme comparePred
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comparePred.lmList comparePred
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corAR1 corAR1
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corARMA corARMA
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corCAR1 corCAR1
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corClasses corClasses
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corCompSymm corCompSymm
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corExp corExp
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corFactor corFactor
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corFactor.corAR1 corFactor.corStruct
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corFactor.corARMA corFactor.corStruct
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corFactor.corCAR1 corFactor.corStruct
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corFactor.corCompSymm corFactor.corStruct
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corFactor.corNatural corFactor.corStruct
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corFactor.corSpatial corFactor.corStruct
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corFactor.corStruct corFactor.corStruct
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corFactor.corSymm corFactor.corStruct
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corGaus corGaus
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corIdent nlme-deprecated
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corLin corLin
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corMatrix corMatrix
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corMatrix.corAR1 corMatrix.corStruct
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corMatrix.corARMA corMatrix.corStruct
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corMatrix.corCAR1 corMatrix.corStruct
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corMatrix.corCompSymm corMatrix.corStruct
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corMatrix.corNatural corMatrix.corStruct
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corMatrix.corSpatial corMatrix.corStruct
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corMatrix.corStruct corMatrix.corStruct
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corMatrix.corSymm corMatrix.corStruct
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corMatrix.pdBlocked corMatrix.pdMat
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corMatrix.pdCompSymm corMatrix.pdMat
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corMatrix.pdDiag corMatrix.pdMat
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corMatrix.pdIdent corMatrix.pdMat
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corMatrix.pdMat corMatrix.pdMat
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corMatrix.pdSymm corMatrix.pdMat
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corMatrix.reStruct corMatrix.reStruct
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corNatural corNatural
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corRatio corRatio
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corSpatial corSpatial
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corSpher corSpher
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corStruct corClasses
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corSymm corSymm
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covariate<- Covariate
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covariate<-.varFunc Covariate.varFunc
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Dialyzer Dialyzer
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Dim Dim
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Dim.corSpatial Dim.corSpatial
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Dim.corStruct Dim.corStruct
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Dim.default Dim
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Dim.pdCompSymm Dim.pdMat
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Dim.pdDiag Dim.pdMat
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Dim.pdIdent Dim.pdMat
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Dim.pdMat Dim.pdMat
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Dim.pdNatural Dim.pdMat
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Dim.pdSymm Dim.pdMat
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Earthquake Earthquake
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ergoStool ergoStool
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Fatigue Fatigue
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fdHess fdHess
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fitted.glsStruct fitted.glsStruct
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fitted.gnlsStruct fitted.gnlsStruct
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fitted.lme fitted.lme
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fitted.lmeStruct fitted.lmeStruct
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fitted.lmList fitted.lmList
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fitted.nlmeStruct fitted.nlmeStruct
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fixed.effects fixed.effects
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fixed.effects.lmList fixef.lmList
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fixef fixed.effects
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fixef.lmList fixef.lmList
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formula.pdBlocked formula.pdBlocked
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formula.pdMat formula.pdMat
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formula.reStruct formula.reStruct
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gapply gapply
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Gasoline Gasoline
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getCovariate getCovariate
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getCovariate.corSpatial getCovariate.corStruct
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getCovariate.corStruct getCovariate.corStruct
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getCovariate.data.frame getCovariate.data.frame
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getCovariate.varFunc getCovariate.varFunc
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getCovariateFormula getCovariateFormula
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getData getData
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getData.gls getData.gls
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getData.gnls getData.gls
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getData.lme getData.lme
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getData.lmList getData.lmList
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getData.nlme getData.lme
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getData.nls getData.lme
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getGroups getGroups
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getGroups.corStruct getGroups.corStruct
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getGroups.data.frame getGroups.data.frame
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getGroups.gls getGroups.gls
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getGroups.lme getGroups.lme
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getGroups.lmList getGroups.lmList
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getGroups.varFunc getGroups.varFunc
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getGroupsFormula getGroupsFormula
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getGroupsFormula.default getGroupsFormula
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getGroupsFormula.gls getGroupsFormula
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getGroupsFormula.lme getGroupsFormula
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getGroupsFormula.lmList getGroupsFormula
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getGroupsFormula.reStruct getGroupsFormula
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getResponse getResponse
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getResponse.data.frame getResponse
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getResponseFormula getResponseFormula
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getVarCov getVarCov
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getVarCov.gls getVarCov
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getVarCov.lme getVarCov
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gls gls
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glsApVar gls-internal
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glsControl glsControl
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glsEstimate gls-internal
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glsObject glsObject
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glsStruct glsStruct
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Glucose Glucose
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Glucose2 Glucose2
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gnls gnls
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gnlsControl gnlsControl
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gnlsObject gnlsObject
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gnlsStruct gnlsStruct
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groupedData groupedData
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gsummary gsummary
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Gun Gun
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IGF IGF
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Initialize Initialize
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Initialize.corAR1 Initialize.corStruct
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Initialize.corARMA Initialize.corStruct
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Initialize.corCAR1 Initialize.corStruct
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Initialize.corCompSymm Initialize.corStruct
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Initialize.corHF Initialize.corStruct
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Initialize.corLin Initialize.corStruct
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Initialize.corNatural Initialize.corStruct
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Initialize.corSpatial Initialize.corStruct
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Initialize.corSpher Initialize.corStruct
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Initialize.corStruct Initialize.corStruct
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Initialize.corSymm Initialize.corStruct
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Initialize.glsStruct Initialize.glsStruct
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Initialize.gnlsStruct gnlsStruct
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Initialize.lmeStruct Initialize.lmeStruct
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Initialize.reStruct Initialize.reStruct
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Initialize.varComb Initialize.varFunc
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Initialize.varConstPower Initialize.varFunc
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Initialize.varConstProp Initialize.varFunc
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Initialize.varExp Initialize.varFunc
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Initialize.varFixed Initialize.varFunc
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Initialize.varFunc Initialize.varFunc
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Initialize.varIdent Initialize.varFunc
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Initialize.varPower Initialize.varFunc
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intervals intervals
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intervals.gls intervals.gls
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intervals.lme intervals.lme
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intervals.lmList intervals.lmList
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isBalanced isBalanced
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isBalanced.groupedData isBalanced
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isInitialized isInitialized
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isInitialized.pdBlocked isInitialized
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isInitialized.pdMat isInitialized
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LDEsysMat LDEsysMat
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lme lme
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lme.formula lme
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lme.groupedData lme.groupedData
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lme.lmList lme.lmList
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lmeControl lmeControl
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lmeObject lmeObject
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lmeStruct lmeStruct
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lmList lmList
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lmList.formula lmList
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lmList.groupedData lmList.groupedData
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logDet logDet
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logDet.corStruct logDet.corStruct
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logDet.pdBlocked logDet.pdMat
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logDet.pdCompSymm logDet.pdMat
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logDet.pdDiag logDet.pdMat
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logDet.pdIdent logDet.pdMat
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logDet.pdMat logDet.pdMat
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logDet.pdNatural logDet.pdMat
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logDet.pdSymm logDet.pdMat
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logDet.reStruct logDet.reStruct
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logLik.corStruct logLik.corStruct
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logLik.gls logLik.lme
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logLik.glsStruct logLik.glsStruct
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logLik.gnls logLik.gnls
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logLik.gnlsStruct logLik.gnlsStruct
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logLik.lme logLik.lme
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logLik.lmeStruct logLik.lmeStruct
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logLik.lmeStructInt logLik.lmeStruct
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logLik.lmList logLik.lmList
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logLik.reStruct logLik.reStruct
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logLik.varComb logLik.varFunc
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logLik.varFunc logLik.varFunc
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Machines Machines
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MathAchieve MathAchieve
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MathAchSchool MathAchSchool
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matrix<- Matrix
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matrix<-.pdBlocked Matrix.pdMat
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matrix<-.pdMat Matrix.pdMat
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matrix<-.reStruct Matrix.reStruct
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Meat Meat
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Milk Milk
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model.matrix.reStruct model.matrix.reStruct
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Muscle Muscle
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Names Names
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Names.formula Names.formula
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Names.listForm Names.formula
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Names.pdBlocked Names.pdBlocked
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Names.pdMat Names.pdMat
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Names.reStruct Names.reStruct
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Names<- Names
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Names<-.pdBlocked Names.pdBlocked
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Names<-.pdMat Names.pdMat
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Names<-.reStruct Names.reStruct
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needUpdate needUpdate
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needUpdate.corStruct needUpdate.modelStruct
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needUpdate.default needUpdate
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needUpdate.modelStruct needUpdate.modelStruct
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needUpdate.reStruct needUpdate.modelStruct
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needUpdate.varComb needUpdate
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needUpdate.varIdent needUpdate
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nfGroupedData nlme-deprecated
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Nitrendipene Nitrendipene
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nlme nlme
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nlme-deprecated nlme-deprecated
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nlme.formula nlme
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nlme.nlsList nlme.nlsList
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nlmeControl nlmeControl
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nlmeObject nlmeObject
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nlmeStruct nlmeStruct
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nlsList nlsList
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nlsList.formula nlsList
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nlsList.selfStart nlsList.selfStart
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nmGroupedData nlme-deprecated
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Oats Oats
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Orthodont Orthodont
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Ovary Ovary
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Oxboys Oxboys
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Oxide Oxide
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pairs.compareFits pairs.compareFits
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pairs.lme pairs.lme
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pairs.lmList pairs.lmList
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PBG PBG
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pdBlocked pdBlocked
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pdClasses pdClasses
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pdCompSymm pdCompSymm
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pdConstruct pdConstruct
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pdConstruct.pdBlocked pdConstruct.pdBlocked
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pdConstruct.pdCompSymm pdConstruct
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pdConstruct.pdDiag pdConstruct
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pdConstruct.pdIdent pdConstruct
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pdConstruct.pdLogChol pdConstruct
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pdConstruct.pdMat pdConstruct
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pdConstruct.pdNatural pdConstruct
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pdConstruct.pdSymm pdConstruct
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pdDiag pdDiag
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pdFactor pdFactor
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pdFactor.pdBlocked pdFactor
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pdFactor.pdCompSymm pdFactor
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pdFactor.pdDiag pdFactor
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pdFactor.pdIdent pdFactor
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pdFactor.pdLogChol pdFactor
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pdFactor.pdMat pdFactor
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pdFactor.pdNatural pdFactor
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pdFactor.pdSymm pdFactor
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pdFactor.reStruct pdFactor.reStruct
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pdIdent pdIdent
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pdLogChol pdLogChol
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pdMat pdMat
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pdMatrix pdMatrix
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pdMatrix.pdBlocked pdMatrix
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pdMatrix.pdCompSymm pdMatrix
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pdMatrix.pdDiag pdMatrix
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pdMatrix.pdIdent pdMatrix
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pdMatrix.pdMat pdMatrix
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pdMatrix.pdNatural pdMatrix
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pdMatrix.pdSymm pdMatrix
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pdMatrix.reStruct pdMatrix.reStruct
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pdNatural pdNatural
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pdSymm pdSymm
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Phenobarb Phenobarb
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phenoModel phenoModel
|
||
|
|
Pixel Pixel
|
||
|
|
plot.ACF plot.ACF
|
||
|
|
plot.augPred plot.augPred
|
||
|
|
plot.compareFits plot.compareFits
|
||
|
|
plot.gls plot.gls
|
||
|
|
plot.intervals.lmList plot.intervals.lmList
|
||
|
|
plot.lme plot.lme
|
||
|
|
plot.lmList plot.lmList
|
||
|
|
plot.nffGroupedData plot.nffGroupedData
|
||
|
|
plot.nfnGroupedData plot.nfnGroupedData
|
||
|
|
plot.nls plot.lme
|
||
|
|
plot.nmGroupedData plot.nmGroupedData
|
||
|
|
plot.pdMat pdMat
|
||
|
|
plot.ranef.lme plot.ranef.lme
|
||
|
|
plot.ranef.lmList plot.ranef.lmList
|
||
|
|
plot.simulate.lme simulate.lme
|
||
|
|
plot.Variogram plot.Variogram
|
||
|
|
pooledSD pooledSD
|
||
|
|
predict.gls predict.gls
|
||
|
|
predict.gnls predict.gnls
|
||
|
|
predict.lme predict.lme
|
||
|
|
predict.lmList predict.lmList
|
||
|
|
predict.nlme predict.nlme
|
||
|
|
print.anova.lme anova.lme
|
||
|
|
print.compareFits compareFits
|
||
|
|
print.corNatural corNatural
|
||
|
|
print.intervals.gls intervals.gls
|
||
|
|
print.intervals.lme intervals.lme
|
||
|
|
print.intervals.lmList intervals.lmList
|
||
|
|
print.lmList lmList
|
||
|
|
print.ranef random.effects
|
||
|
|
print.ranef.lme ranef.lme
|
||
|
|
print.reStruct reStruct
|
||
|
|
print.simulate.lme simulate.lme
|
||
|
|
print.summary.lme summary.lme
|
||
|
|
print.summary.pdMat print.summary.pdMat
|
||
|
|
print.varComb print.varFunc
|
||
|
|
print.VarCorr.lme VarCorr
|
||
|
|
print.VarCov getVarCov
|
||
|
|
print.varFunc print.varFunc
|
||
|
|
qqnorm.gls qqnorm.gls
|
||
|
|
qqnorm.lm qqnorm.lme
|
||
|
|
qqnorm.lme qqnorm.lme
|
||
|
|
qqnorm.lmList qqnorm.lme
|
||
|
|
qqnorm.nls qqnorm.lme
|
||
|
|
Quinidine Quinidine
|
||
|
|
quinModel quinModel
|
||
|
|
Rail Rail
|
||
|
|
random.effects random.effects
|
||
|
|
random.effects.lme ranef.lme
|
||
|
|
random.effects.lmList ranef.lmList
|
||
|
|
ranef random.effects
|
||
|
|
ranef.lme ranef.lme
|
||
|
|
ranef.lmList ranef.lmList
|
||
|
|
RatPupWeight RatPupWeight
|
||
|
|
recalc recalc
|
||
|
|
recalc.corAR1 recalc.corStruct
|
||
|
|
recalc.corARMA recalc.corStruct
|
||
|
|
recalc.corCAR1 recalc.corStruct
|
||
|
|
recalc.corCompSymm recalc.corStruct
|
||
|
|
recalc.corHF recalc.corStruct
|
||
|
|
recalc.corNatural recalc.corStruct
|
||
|
|
recalc.corSpatial recalc.corStruct
|
||
|
|
recalc.corStruct recalc.corStruct
|
||
|
|
recalc.corSymm recalc.corStruct
|
||
|
|
recalc.modelStruct recalc.modelStruct
|
||
|
|
recalc.reStruct recalc.reStruct
|
||
|
|
recalc.varFunc recalc.varFunc
|
||
|
|
recalc.varIdent recalc.varFunc
|
||
|
|
Relaxin Relaxin
|
||
|
|
Remifentanil Remifentanil
|
||
|
|
residuals.gls residuals.gls
|
||
|
|
residuals.glsStruct residuals.glsStruct
|
||
|
|
residuals.gnls residuals.gls
|
||
|
|
residuals.gnlsStruct residuals.gnlsStruct
|
||
|
|
residuals.lme residuals.lme
|
||
|
|
residuals.lmeStruct residuals.lmeStruct
|
||
|
|
residuals.lmList residuals.lmList
|
||
|
|
residuals.nlmeStruct residuals.nlmeStruct
|
||
|
|
reStruct reStruct
|
||
|
|
simulate.lme simulate.lme
|
||
|
|
solve.pdBlocked solve.pdMat
|
||
|
|
solve.pdDiag solve.pdMat
|
||
|
|
solve.pdIdent solve.pdMat
|
||
|
|
solve.pdLogChol solve.pdMat
|
||
|
|
solve.pdMat solve.pdMat
|
||
|
|
solve.pdNatural solve.pdMat
|
||
|
|
solve.pdSymm solve.pdMat
|
||
|
|
solve.reStruct solve.reStruct
|
||
|
|
Soybean Soybean
|
||
|
|
splitFormula splitFormula
|
||
|
|
Spruce Spruce
|
||
|
|
summary.corAR1 summary.corStruct
|
||
|
|
summary.corARMA summary.corStruct
|
||
|
|
summary.corCAR1 summary.corStruct
|
||
|
|
summary.corCompSymm summary.corStruct
|
||
|
|
summary.corExp summary.corStruct
|
||
|
|
summary.corGaus summary.corStruct
|
||
|
|
summary.corLin summary.corStruct
|
||
|
|
summary.corNatural summary.corStruct
|
||
|
|
summary.corRatio summary.corStruct
|
||
|
|
summary.corSpher summary.corStruct
|
||
|
|
summary.corStruct summary.corStruct
|
||
|
|
summary.corSymm summary.corStruct
|
||
|
|
summary.gls summary.gls
|
||
|
|
summary.lme summary.lme
|
||
|
|
summary.lmList summary.lmList
|
||
|
|
summary.modelStruct summary.modelStruct
|
||
|
|
summary.nlsList summary.nlsList
|
||
|
|
summary.pdBlocked summary.pdMat
|
||
|
|
summary.pdCompSymm summary.pdMat
|
||
|
|
summary.pdDiag summary.pdMat
|
||
|
|
summary.pdIdent summary.pdMat
|
||
|
|
summary.pdLogChol summary.pdMat
|
||
|
|
summary.pdMat summary.pdMat
|
||
|
|
summary.pdNatural summary.pdMat
|
||
|
|
summary.pdSymm summary.pdMat
|
||
|
|
summary.reStruct summary.modelStruct
|
||
|
|
summary.varComb summary.varFunc
|
||
|
|
summary.varConstPower summary.varFunc
|
||
|
|
summary.varConstProp summary.varFunc
|
||
|
|
summary.varExp summary.varFunc
|
||
|
|
summary.varFixed summary.varFunc
|
||
|
|
summary.varFunc summary.varFunc
|
||
|
|
summary.varIdent summary.varFunc
|
||
|
|
summary.varPower summary.varFunc
|
||
|
|
Tetracycline1 Tetracycline1
|
||
|
|
Tetracycline2 Tetracycline2
|
||
|
|
update.corStruct update.modelStruct
|
||
|
|
update.gls gls
|
||
|
|
update.groupedData groupedData
|
||
|
|
update.lme lme
|
||
|
|
update.lmList lmList
|
||
|
|
update.modelStruct update.modelStruct
|
||
|
|
update.nlsList nlsList
|
||
|
|
update.reStruct update.modelStruct
|
||
|
|
update.varComb update.varFunc
|
||
|
|
update.varConstPower update.varFunc
|
||
|
|
update.varConstProp update.varFunc
|
||
|
|
update.varExp update.varFunc
|
||
|
|
update.varExpon update.varFunc
|
||
|
|
update.varFunc update.varFunc
|
||
|
|
update.varPower update.varFunc
|
||
|
|
varClasses varClasses
|
||
|
|
varComb varComb
|
||
|
|
varConstPower varConstPower
|
||
|
|
varConstProp varConstProp
|
||
|
|
VarCorr VarCorr
|
||
|
|
VarCorr.lme VarCorr
|
||
|
|
VarCorr.pdBlocked VarCorr
|
||
|
|
VarCorr.pdMat VarCorr
|
||
|
|
varExp varExp
|
||
|
|
varFixed varFixed
|
||
|
|
varFunc varFunc
|
||
|
|
varIdent varIdent
|
||
|
|
Variogram Variogram
|
||
|
|
Variogram.corExp Variogram.corExp
|
||
|
|
Variogram.corGaus Variogram.corGaus
|
||
|
|
Variogram.corLin Variogram.corLin
|
||
|
|
Variogram.corRatio Variogram.corRatio
|
||
|
|
Variogram.corSpatial Variogram.corSpatial
|
||
|
|
Variogram.corSpher Variogram.corSpher
|
||
|
|
Variogram.default Variogram.default
|
||
|
|
Variogram.gls Variogram.gls
|
||
|
|
Variogram.lme Variogram.lme
|
||
|
|
varPower varPower
|
||
|
|
varWeights varWeights
|
||
|
|
varWeights.glsStruct varWeights.glsStruct
|
||
|
|
varWeights.lmeStruct varWeights.lmeStruct
|
||
|
|
varWeights.varComb varWeights
|
||
|
|
varWeights.varFunc varWeights
|
||
|
|
Wafer Wafer
|
||
|
|
Wheat Wheat
|
||
|
|
Wheat2 Wheat2
|
||
|
|
[.groupedData groupedData
|
||
|
|
[.pdBlocked Extract.pdMat
|
||
|
|
[.pdMat Extract.pdMat
|
||
|
|
[.reStruct reStruct
|
||
|
|
[<-.pdMat Extract.pdMat
|