62 lines
2.9 KiB
Plaintext
62 lines
2.9 KiB
Plaintext
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Package: IRanges
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Title: Foundation of integer range manipulation in Bioconductor
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Description: Provides efficient low-level and highly reusable S4
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classes for storing, manipulating and aggregating over annotated
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ranges of integers. Implements an algebra of range operations,
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including efficient algorithms for finding overlaps and nearest
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neighbors. Defines efficient list-like classes for storing,
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transforming and aggregating large grouped data, i.e., collections
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of atomic vectors and DataFrames.
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biocViews: Infrastructure, DataRepresentation
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URL: https://bioconductor.org/packages/IRanges
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BugReports: https://github.com/Bioconductor/IRanges/issues
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Version: 2.40.1
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License: Artistic-2.0
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Encoding: UTF-8
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Authors@R: c(
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person("Hervé", "Pagès", role=c("aut", "cre"),
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email="hpages.on.github@gmail.com"),
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person("Patrick", "Aboyoun", role="aut"),
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person("Michael", "Lawrence", role="aut"))
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Depends: R (>= 4.0.0), methods, utils, stats, BiocGenerics (>= 0.39.2),
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S4Vectors (>= 0.43.2)
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Imports: stats4
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LinkingTo: S4Vectors
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Suggests: XVector, GenomicRanges, Rsamtools, GenomicAlignments,
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GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
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RUnit, BiocStyle
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Collate: range-squeezers.R Vector-class-leftovers.R
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DataFrameList-class.R DataFrameList-utils.R AtomicList-class.R
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AtomicList-utils.R Ranges-and-RangesList-classes.R
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IPosRanges-class.R IPosRanges-comparison.R
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IntegerRangesList-class.R IRanges-class.R IRanges-constructor.R
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IRanges-utils.R Rle-class-leftovers.R IPos-class.R
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subsetting-utils.R Grouping-class.R Views-class.R
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RleViews-class.R RleViews-utils.R extractList.R seqapply.R
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multisplit.R SimpleGrouping-class.R IRangesList-class.R
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IPosList-class.R ViewsList-class.R RleViewsList-class.R
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RleViewsList-utils.R RangedSelection-class.R
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MaskCollection-class.R read.Mask.R CompressedList-class.R
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CompressedList-comparison.R CompressedHitsList-class.R
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CompressedDataFrameList-class.R CompressedAtomicList-class.R
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CompressedGrouping-class.R CompressedRangesList-class.R
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Hits-class-leftovers.R NCList-class.R findOverlaps-methods.R
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windows-methods.R intra-range-methods.R inter-range-methods.R
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reverse-methods.R coverage-methods.R cvg-methods.R
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slice-methods.R setops-methods.R nearest-methods.R
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cbind-Rle-methods.R tile-methods.R extractListFragments.R zzz.R
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git_url: https://git.bioconductor.org/packages/IRanges
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git_branch: RELEASE_3_20
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git_last_commit: 535f07e
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git_last_commit_date: 2024-12-02
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Repository: Bioconductor 3.20
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Date/Publication: 2024-12-05
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NeedsCompilation: yes
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Packaged: 2024-12-06 00:46:50 UTC; biocbuild
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Author: Hervé Pagès [aut, cre],
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Patrick Aboyoun [aut],
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Michael Lawrence [aut]
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Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
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Built: R 4.4.2; x86_64-w64-mingw32; 2024-12-06 13:23:57 UTC; windows
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Archs: x64
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