85 lines
4.3 KiB
Plaintext
85 lines
4.3 KiB
Plaintext
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BiocGenerics-package S4 generic functions for Bioconductor
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Extremes Maxima and minima
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IQR The Interquartile Range
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Ontology Generic Ontology getter
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S3-classes-as-S4-classes
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S3 classes as S4 classes
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annotation Accessing annotation information
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aperm Transposing an array-like object
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append Append elements to a vector-like object
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as.data.frame Coerce to a data frame
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as.list Coerce to a list
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as.vector Coerce an object into a vector
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boxplot Box plots
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cbind Combine objects by rows or columns
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combine Combining or merging different Bioconductor
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data structures
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containsOutOfMemoryData
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Does an object contain out-of-memory data?
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dbconn Accessing SQLite DB information
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density Kernel density estimation
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dge Accessors and generic functions used in the
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context of count datasets
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dims Get the dimensions of each element of a
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list-like object
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do.call Execute a function call
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duplicated Determine duplicate elements
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eval Evaluate an (unevaluated) expression
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evalq Evaluate an (unevaluated) expression
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fileName Accessing the file name of an object
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format Format an R object for pretty printing
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funprog Common higher-order functions in functional
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programming languages
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get Return the value of a named object
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grep Pattern Matching and Replacement
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image Display a color image
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is.unsorted Test if a vector-like object is not sorted
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lapply Apply a function over a list-like or
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vector-like object
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mad Median Absolute Deviation
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mapply Apply a function to multiple list-like or
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vector-like arguments
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match Value matching
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mean Arithmetic Mean
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normalize Normalize an object
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nrow The number of rows/columns of an array-like
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object
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order Ordering permutation
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organism_species Organism and species accessors
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paste Concatenate strings
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path Accessing the path of an object
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plotMA MA-plot: plot differences versus averages for
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high-throughput data
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plotPCA PCA-plot: Principal Component Analysis plot
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rank Ranks the values in a vector-like object
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relist Re-listing an unlist()ed object
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rep.int Replicate elements of a vector-like object
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residuals Extract model residuals
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row+colnames Row and column names
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saveRDS The saveRDS() S4 generic and default method
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score Score accessor
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sets Set operations
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sort Sorting a vector-like object
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start The start(), end(), width(), and pos() generic
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getters and setters
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strand Accessing strand information
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subset Subsetting vector-like, matrix-like and
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data-frame-like objects
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t Matrix Transpose
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table Cross tabulation and table creation
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tapply Apply a function over a ragged array
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testPackage Run RUnit package unit tests
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toTable An alternative to as.data.frame()
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type Accessing the type of an object
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unique Extract unique elements
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unlist Flatten list-like objects
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unsplit Unsplit a list-like object
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updateObject Update an object to its current class
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definition
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var Variance and Standard Deviation
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weights Extract model weights
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which Which values in an object are considered TRUE?
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which.min What's the index of the first min or max value
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in an object?
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xtabs Cross tabulation
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